View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14612_low_2 (Length: 536)
Name: NF14612_low_2
Description: NF14612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14612_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 3856003 - 3855695
Alignment:
| Q |
19 |
gtccaactataaggaagtacaaatatctactttaggaataaaaatactatttataaacaaatagaaaataattttacaatgtttactatcatgttaggag |
118 |
Q |
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| T |
3856003 |
gtccaactataaggaagtacaaatatctactttaggaataaaacaactatttataaacaaatagaaaataattttacaatgtttactatcatgttaggag |
3855904 |
T |
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| Q |
119 |
aaataatttaaatacacctatcaacaaattctaaattggaattgtgtagtctttcatcattaccccatcgcacaaagaatgatgtagaagcagatgatca |
218 |
Q |
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| T |
3855903 |
aaataatttaaatacacctatcaacaaattctaaattggaattgtgtagtctttcaacattaccccatcgcacaaagaatgatgtagaagcagatgatca |
3855804 |
T |
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| Q |
219 |
cgcttgtcaaacaccaaaataaataattttatcaagtattctttgctatttccnnnnnnnaaaataaataaaagggaaataaacatttttatgtataaat |
318 |
Q |
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| T |
3855803 |
cgcttgtcaaacaccaaaataaataattttatcaagtattctttgctatttccttttttta----aaataaaggggaaataaacatttttatgtataaat |
3855708 |
T |
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| Q |
319 |
aaattatgaacaa |
331 |
Q |
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| T |
3855707 |
aaattatgaacaa |
3855695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 361 - 534
Target Start/End: Complemental strand, 3855702 - 3855529
Alignment:
| Q |
361 |
atgaccaagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatcaaaacgttaactcttttgtctgcgtcttg |
460 |
Q |
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| T |
3855702 |
atgaacaagacgcctataatctttatatatcaatggcgaagtcctttatctttgacagacagcctcctatcaaaacattaactcttttgtctgcgtcttg |
3855603 |
T |
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| Q |
461 |
cttttgcaactctgcctcgttgcttcgttggcttcaccctgtagtcaatgggtttgttgatgatgtccatctca |
534 |
Q |
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| T |
3855602 |
cttttgcaactctgcctcgttgcttcgttggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctca |
3855529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 413 - 481
Target Start/End: Original strand, 4140973 - 4141041
Alignment:
| Q |
413 |
tgacagacagcctcctatcaaaacgttaactcttttgtctgcgtcttgcttttgcaactctgcctcgtt |
481 |
Q |
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| T |
4140973 |
tgacagacagctacctatcaaaacattaactcttttgtccgcgtctcgcttctgcaactctgcctcgtt |
4141041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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