View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14612_low_9 (Length: 237)
Name: NF14612_low_9
Description: NF14612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14612_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 6998582 - 6998380
Alignment:
| Q |
16 |
aaaggggagggagttgctatcagtacacgttggattgtgagaaggatgttgccatatcaatattttaaggtgaactcaatgatatattcatgtagtttgt |
115 |
Q |
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| T |
6998582 |
aaaggggagggagttgctatcagtccacgttggattgtgagaaggatgttgccatatcaatattttaaggtgaactcaatgatat--tcacgtagtttgt |
6998485 |
T |
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| Q |
116 |
tcgggtatgtaactttcatgttattaatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttgcatagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
6998484 |
tcgggtatgtaactttcatgttattaatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaactttgcttagta |
6998385 |
T |
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| Q |
216 |
tcact |
220 |
Q |
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||||| |
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| T |
6998384 |
tcact |
6998380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 4626723 - 4626785
Alignment:
| Q |
144 |
caatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattt |
206 |
Q |
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| T |
4626723 |
caatgacatgtcatatttttacattaatttattttaaaataagtttaaatgttaaacaaattt |
4626785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 37492660 - 37492722
Alignment:
| Q |
145 |
aatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaatttt |
207 |
Q |
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| T |
37492660 |
aatgtcatgtcatatttttacattaatttattttaaaataaatttaaatgttaaacaaatttt |
37492722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 4693016 - 4692949
Alignment:
| Q |
138 |
attaatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaatt |
205 |
Q |
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| T |
4693016 |
attattcaatgacatgtcatatttgcatcttaatttattttaaaataaatttaaatgttaaacaaatt |
4692949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 39489736 - 39489669
Alignment:
| Q |
141 |
aatcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttgc |
209 |
Q |
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| T |
39489736 |
aatcaatatcatgtcatatttt-atattaatttattttaaaataaattcaaatattaaataaattttgc |
39489669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 35120197 - 35120156
Alignment:
| Q |
166 |
attaatttattctaaaatagatttaaatgttaaataaatttt |
207 |
Q |
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| T |
35120197 |
attaatttattttaaaataaatttaaatgttaaataaatttt |
35120156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 34430449 - 34430514
Alignment:
| Q |
143 |
tcaatgacatgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttg |
208 |
Q |
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| T |
34430449 |
tcaatgtcatgtcatatttttatattaatttatattaaaataaatttaaatgttaaacaaattttg |
34430514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 11443890 - 11443847
Alignment:
| Q |
166 |
attaatttattctaaaatagatttaaatgttaaataaattttgc |
209 |
Q |
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| T |
11443890 |
attaatttattttaaaataaatttaaatgttaaacaaattttgc |
11443847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 513924 - 513981
Alignment:
| Q |
151 |
atgtcaaattttgagattaatttattctaaaatagatttaaatgttaaataaattttg |
208 |
Q |
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|||||| ||||| | ||||||||||| ||||||| |||||||||||| | |||||||| |
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| T |
513924 |
atgtcatatttttatattaatttattttaaaataaatttaaatgttacacaaattttg |
513981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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