View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14613_high_10 (Length: 279)

Name: NF14613_high_10
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14613_high_10
NF14613_high_10
[»] chr4 (3 HSPs)
chr4 (4-266)||(6612691-6612952)
chr4 (3-223)||(27014988-27015208)
chr4 (3-106)||(42329360-42329463)
[»] scaffold0381 (1 HSPs)
scaffold0381 (3-223)||(4575-4795)
[»] chr3 (3 HSPs)
chr3 (6-216)||(54565450-54565662)
chr3 (3-160)||(12530143-12530300)
chr3 (3-153)||(44491161-44491311)
[»] chr1 (2 HSPs)
chr1 (6-152)||(41327550-41327696)
chr1 (6-152)||(41337782-41337927)
[»] chr5 (1 HSPs)
chr5 (4-208)||(22789992-22790196)
[»] chr8 (2 HSPs)
chr8 (51-256)||(29383150-29383355)
chr8 (3-106)||(43222040-43222143)
[»] chr2 (1 HSPs)
chr2 (3-263)||(45009952-45010211)
[»] chr6 (4 HSPs)
chr6 (6-152)||(20916366-20916512)
chr6 (6-152)||(20926302-20926447)
chr6 (75-152)||(20916791-20916868)
chr6 (111-174)||(17395936-17395999)
[»] chr7 (1 HSPs)
chr7 (1-106)||(8866223-8866328)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 266
Target Start/End: Original strand, 6612691 - 6612952
Alignment:
Q  4 gttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacact 103  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  6612691 gttggaattgccgaggtt-gggtagcccgagcgcaactcctgatttaaaatatctccttcagcacttcaatccggacgtactcttcttaagtgagacact 6612789  T
Q  104 agtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattt 203  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6612790 agtatcccgaaataaaattgaagttttacgttacttgcttggttttgattcctgtttttccgttgattgcaccggtaggagtggtggccttgctttattt 6612889  T
Q  204 tggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaattt 266  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6612890 tggcgtacctcttctaattgcatgcttgttaattattctaataatcatattacagttgaattt 6612952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 27015208 - 27014988
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||     
T  27015208 agttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttttaagtgagacat 27015109  T
Q  103 tagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttatt 202  Q
    | ||    |||||||||||||| ||||| || || ||||| ||||||||||| |||||||| ||||||||||||  ||| || ||||| |||||||||||    
T  27015108 tggttcgccgaaataaaattgaagtttttcgatatttgctcggttttgattcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttatt 27015009  T
Q  203 ttggcgtacctcttctaattg 223  Q
      |||| || |||||||||||    
T  27015008 ccggcgcacttcttctaattg 27014988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 42329360 - 42329463
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    |||||||||||| | ||||||||||||| ||  |||| ||  |||||||| || || ||||| ||||||||||||||| |  | || ||||||||||||     
T  42329360 agttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggcacttcaatccggacctcttatttttaagtgagacat 42329459  T
Q  103 tagt 106  Q
    ||||    
T  42329460 tagt 42329463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 4575 - 4795
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||||||||     
T  4575 agttggaactgccggggattaggcagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacatactctttttaagtgagacat 4674  T
Q  103 tagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttatt 202  Q
    | ||    |||||||||||||| ||||| || || ||||| ||||||||||| |||||||| ||||||||||||  ||| || ||||| |||||||||||    
T  4675 tggttcgccgaaataaaattgaagtttttcgatatttgctcggttttgattcttgtttttctgttgattgcaccaatagaagcggtggtcttgctttatt 4774  T
Q  203 ttggcgtacctcttctaattg 223  Q
      |||| || |||||||||||    
T  4775 ccggcgcacttcttctaattg 4795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 216
Target Start/End: Complemental strand, 54565662 - 54565450
Alignment:
Q  6 tggaattgccgaggtttggg-tagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacg-tactcttcttaagtgagacact 103  Q
    |||||||| || |||||||| |||||  ||||||| |||||||||||| ||  | ||||| ||||| |||||||||  || | || |||||||||||| |    
T  54565662 tggaattgacggggtttggggtagcccaagcgcaattcttgatttaaagtacatagttcggcactttaatccggaccctattatttttaagtgagacatt 54565563  T
Q  104 agtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattt 203  Q
    |||    || ||||||||||| | | | |||||| |||||| ||||||||  |||||||| |||||||| || | ||| |||||||||||||| ||||||    
T  54565562 agtccatcgtaataaaattgaagctctacgttacgtgcttgattttgatttttgtttttctgttgattgtactggtagaagtggtggccttgcattattt 54565463  T
Q  204 tggcgtacctctt 216  Q
    |||||| ||||||    
T  54565462 tggcgtgcctctt 54565450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 12530300 - 12530143
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    |||||||| ||||| || || || |||| |||||||  || |||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||     
T  12530300 agttggaactgccggggattaggaagcccgagcgcagttcctgatttgaaatatctcgttcgacacttcaatccagacgtactctttttaagtcagacat 12530201  T
Q  103 tagtatca-cgaaataaaattgacgttttccgttacttgcttggttttgattcctgttt 160  Q
    | || ||| |||||||||||||| | ||| || || ||||| ||||||||||| |||||    
T  12530200 tggt-tcaccgaaataaaattgaagcttttcgatatttgctcggttttgattcttgttt 12530143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 44491161 - 44491311
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    |||||||||||| | ||||||||||||| ||  |||| ||  |||||||| || || |||||  |||||||||||||| |  | || |||| |||||| |    
T  44491161 agttggaattgcaggggtttgggtagcccgaatgcaattccagatttaaagtacctagttcggtacttcaatccggaccttttatttttaactgagacgc 44491260  T
Q  103 tagtatcacgaaataaaattgacgttttccgttacttgcttggttttgatt 153  Q
    ||||    |||||||||||||| |  || |||||||||||||| |||||||    
T  44491261 tagtccaccgaaataaaattgaagaattacgttacttgcttggctttgatt 44491311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 41327550 - 41327696
Alignment:
Q  6 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 105  Q
    ||||||||||| ||||| ||||||  |||||||| |  |||  ||||||| || ||||  ||||||||||||||| | |||||||||||||||| | |||    
T  41327550 tggaattgccggggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattag 41327649  T
Q  106 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 152  Q
    |    |||||||||||||| | ||| |||||||||||||||||||||    
T  41327650 tccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41327696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 41337782 - 41337927
Alignment:
Q  6 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 105  Q
    |||||||||| |||||| ||||||  |||||||| |  |||  ||||||| || ||||  ||||||||||||||| | |||||||||||||||| | |||    
T  41337782 tggaattgcc-aggtttaggtagctcgagcgcaattgctgacctaaaatacctagttctacacttcaatccggacctcctcttcttaagtgagatattag 41337880  T
Q  106 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 152  Q
    |    |||||||||||||| | ||| |||||||||||||||||||||    
T  41337881 tccaccgaaataaaattgaagatttacgttacttgcttggttttgat 41337927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 208
Target Start/End: Complemental strand, 22790196 - 22789992
Alignment:
Q  4 gttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacact 103  Q
    ||||||||||| | ||||| ||||||| ||| |||| |  ||||||||| || || ||||| |||||||||||||   || | ||||||||||||||| |    
T  22790196 gttggaattgcaggggtttaggtagcccgagtgcaatttctgatttaaagtacctagttcggcacttcaatccggttctattattcttaagtgagacatt 22790097  T
Q  104 agtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattt 203  Q
    |||    || ||||||||||| | ||| ||| || |||||||||||||||  || ||||| ||||||||    | ||| |||||||||||||| ||||||    
T  22790096 agtccaccgtaataaaattgaagctttacgtcacctgcttggttttgattgatgcttttctgttgattgttatggtagaagtggtggccttgcattattt 22789997  T
Q  204 tggcg 208  Q
    |||||    
T  22789996 tggcg 22789992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 29383150 - 29383355
Alignment:
Q  51 aaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttg 150  Q
    ||||| ||||||||  ||||||||  |||| |||| || |||||||||||||||||    |||||||||||||| | ||| ||||| ||||| |||||||    
T  29383150 aaatacctcgttcgatacttcaatatggacctactatttttaagtgagacactagtccaccgaaataaaattgaagatttacgttatttgctgggttttg 29383249  T
Q  151 attcctgtttttccgttgattgcaccgctaggagtggtggccttgctttattttggcgtacctcttctaattgcacgcttgttaattattctaataatca 250  Q
    |||| || ||||  |||||| |||||| |||  | || || ||||||||||| ||||| || |||  | ||||    |||||||||| ||||||||||||    
T  29383250 attcttgcttttatgttgatcgcaccggtagtggaggcggtcttgctttattgtggcgcacttctcttcattgtcaacttgttaatttttctaataatca 29383349  T
Q  251 tattac 256  Q
     |||||    
T  29383350 cattac 29383355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 43222143 - 43222040
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    ||||||||||| || || |||||||  | ||||| || | ||||||||||||||||||||||  ||| ||||||||   | || |||||| |||||||||    
T  43222143 agttggaattgtcggggattgggtaatccgagcgtaatttttgatttaaaatatctcgttcggtactacaatccggctatccttttcttatgtgagacac 43222044  T
Q  103 tagt 106  Q
    ||||    
T  43222043 tagt 43222040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 45009952 - 45010211
Alignment:
Q  3 agttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacac 102  Q
    ||||||||||| || ||||| ||||||| |||||||| ||  || || ||||| ||  |||| ||||| ||||||||| | |||||||||||||||||      
T  45009952 agttggaattgtcg-ggtttaggtagcccgagcgcaattcccgacttgaaatacctaattcggcactttaatccggacatcctcttcttaagtgagactt 45010050  T
Q  103 tagtatcacgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgcaccgctaggagtggtggccttgctttatt 202  Q
    ||||    |||||||||||||| |  ||   |||||| |||||||||||||| ||| | || |||||  |||| |  ||  |||| || ||||| |||||    
T  45010051 tagtccatcgaaataaaattgaagaattattttacttacttggttttgattcttgtatctcagttgaccgcactggaagaggtgggggtcttgccttatt 45010150  T
Q  203 ttggcgtacctcttctaattgcacgcttgttaattattctaataatcatattacagttgaa 263  Q
    ||||| |    |||||| |||||  |||||| ||| |||||||||||||||||| ||||||    
T  45010151 ttggcatcatacttctagttgcaatcttgttgatttttctaataatcatattactgttgaa 45010211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 20916366 - 20916512
Alignment:
Q  6 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 105  Q
    ||||||||||| ||||| ||||||  |||||||| ||  ||  ||||| | || ||||  | |||||| |||||| | |||||||||||||||| | |||    
T  20916366 tggaattgccggggtttaggtagctcgagcgcaattcccgacctaaaacacctagttctacccttcaacccggacctcctcttcttaagtgagatattag 20916465  T
Q  106 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 152  Q
    |    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916466 tccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 152
Target Start/End: Original strand, 20926302 - 20926447
Alignment:
Q  6 tggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagacactag 105  Q
    |||||||||| |||||| ||||||  |||||||| || |||  |||||||  | | ||| ||||||||||| ||| | |||||||||||||||| | |||    
T  20926302 tggaattgcc-aggtttaggtagctcgagcgcaattcctgacctaaaatacttagctcgacacttcaatccagacctcctcttcttaagtgagatattag 20926400  T
Q  106 tatcacgaaataaaattgacgttttccgttacttgcttggttttgat 152  Q
    |    |||||||||||||| | ||  ||||| |||||||||||||||    
T  20926401 tccaccgaaataaaattgaagattgacgttatttgcttggttttgat 20926447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 20916791 - 20916868
Alignment:
Q  75 ccggacgtactcttcttaagtgagacactagtatcacgaaataaaattgacgttttccgttacttgcttggttttgat 152  Q
    |||||| | |||||||||||||||| | ||||    |||||||||||||| | ||| |||||||||||||||||||||    
T  20916791 ccggacctcctcttcttaagtgagatattagtccaccgaaataaaattgaagatttacgttacttgcttggttttgat 20916868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 17395999 - 17395936
Alignment:
Q  111 cgaaataaaattgacgttttccgttacttgcttggttttgattcctgtttttccgttgattgca 174  Q
    |||||||||||||| ||||| ||| || ||||||||||| |||| ||||||||  |||||||||    
T  17395999 cgaaataaaattgaagtttttcgtaacatgcttggtttttattcttgtttttcttttgattgca 17395936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 8866328 - 8866223
Alignment:
Q  1 tcagttggaattgccgaggtttgggtagcctgagcgcaactcttgatttaaaatatctcgttcgccacttcaatccggacgtactcttcttaagtgagac 100  Q
    ||||||||||||| || || || |||||||  | ||||| ||  || || ||||| || ||||| |||||||||| |||| |||| || |||||||||||    
T  8866328 tcagttggaattgtcggggcttaggtagccctaacgcaattccggacttgaaatacctggttcggcacttcaatcaggacctactatttttaagtgagac 8866229  T
Q  101 actagt 106  Q
    ||||||    
T  8866228 actagt 8866223  T

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