View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14613_high_11 (Length: 239)

Name: NF14613_high_11
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14613_high_11
NF14613_high_11
[»] chr7 (6 HSPs)
chr7 (18-239)||(35789437-35789658)
chr7 (56-147)||(35799103-35799194)
chr7 (76-235)||(35785646-35785802)
chr7 (56-229)||(35755524-35755700)
chr7 (56-147)||(35760670-35760761)
chr7 (149-235)||(35760778-35760864)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 35789437 - 35789658
Alignment:
Q  18 caatggaagcatcatactgtttccaaaagnnnnnnnggttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgt 117  Q
    |||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35789437 caatgggagcatcatactgtttccaaaagtttttttggttatttccatgttggttcgattcccatccccgagcaacatcatttggttcataaggctttgt 35789536  T
Q  118 taacttttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttca 217  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35789537 taacttttcgtcttcttcgtccccccatcctggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttca 35789636  T
Q  218 atgttgcggcggtcctctactt 239  Q
    |||||||||| | |||||||||    
T  35789637 atgttgcggcaggcctctactt 35789658  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 35799103 - 35799194
Alignment:
Q  56 ttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcc 147  Q
    |||||| |||||||||| ||||| |||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  35799103 ttattttcatgttggtttgattcgcatcccagagcagcataatttggttcagaaggctttgttaacttttcgtcttcttcgtccccccatcc 35799194  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 35785646 - 35785802
Alignment:
Q  76 ttcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcctggacccgataaggactgatccaagaag 175  Q
    |||||||||| ||||| |||  ||||||||| | ||||||||||  |||||   |||||||||||||||||| ||||| || |||||||||| ||||| |    
T  35785646 ttcccatccctgagcagcatagtttggttcagagggctttgttacgttttc---ttctttgtccccccatccaggaccagacaaggactgattcaagagg 35785742  T
Q  176 agagaactactgagaatcacgacttcctcgcctttttcttcaatgttgcggcggtcctct 235  Q
    |||||||||| ||||||||||| |||||||  |||||  || |||||||||||| |||||    
T  35785743 agagaactaccgagaatcacgatttcctcgggtttttgatccatgttgcggcgggcctct 35785802  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 35755524 - 35755700
Alignment:
Q  56 ttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaactt----ttcgtcttctttgtccccccatcctgga 151  Q
    |||||| ||||||| || |||||||||||| || || ||| |||||| ||| |||||||| | |||||    ||  ||||||| ||||||||||||||||    
T  35755524 ttattttcatgttgatttgattcccatccctgaccagcataatttggctcagaaggctttct-aacttcttctttttcttcttcgtccccccatcctgga 35755622  T
Q  152 cccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttcaatgttgcggcgg 229  Q
    || || ||||| |||  |||||  | ||| ||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  35755623 cctgaaaaggaatgactcaagagaaaagagctactgagaatcacggcctcctcgcctttttcttctatgttgcggcgg 35755700  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 35760670 - 35760761
Alignment:
Q  56 ttatttccatgttggttcgattcccatcccagagcaacatcatttggttcataaggctttgttaacttttcgtcttctttgtccccccatcc 147  Q
    |||||| ||||||||||||||||||||||| ||||| ||| ||| |||||| ||||||||||||  | ||  ||||||| ||||||||||||    
T  35760670 ttattttcatgttggttcgattcccatccctgagcagcataattcggttcagaaggctttgttacttctttttcttcttcgtccccccatcc 35760761  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 35760778 - 35760864
Alignment:
Q  149 ggacccgataaggactgatccaagaagagagaactactgagaatcacgacttcctcgcctttttcttcaatgttgcggcggtcctct 235  Q
    ||||| || |||||||||| |||||  ||||||||||  ||||||||  || |||||||||||||||| ||||| |||||| |||||    
T  35760778 ggaccggaaaaggactgattcaagagaagagaactaccaagaatcacagctgcctcgcctttttcttccatgttacggcgggcctct 35760864  T

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