View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_high_16 (Length: 230)
Name: NF14613_high_16
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 32520723 - 32520892
Alignment:
| Q |
21 |
ggttagacggttcatataaacgcatttgcaaaattgttgtaaatgatctcgaccatgtatttaaaattatacggtccatgtatgttaaatataattcatt |
120 |
Q |
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| T |
32520723 |
ggttatacggttcatattaacgcatttgcaaaattgttgtaaacgatctcaatcgtatatttaaagtcatacggtcctggtatgttagata--attcatt |
32520820 |
T |
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| Q |
121 |
gaaaatatatattggtagtcgttttcattccaaaaaatttccgttctatttaaattctctctatcagtgtga |
192 |
Q |
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| T |
32520821 |
gaaaatatatatttgtagtcgttttcattccaacaaatttccattctatttaaattctctttgtcagtgtga |
32520892 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 32525368 - 32525446
Alignment:
| Q |
114 |
attcattgaaaatatatattggtagtcgttttcattccaaaaaatttccgttctatttaaattctctctatcagtgtga |
192 |
Q |
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| T |
32525368 |
attcattgaaaatatatattggtagtcgttttcattccaagaaattttcgttctatttaaattctctctgtcagtgtga |
32525446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 32525304 - 32525367
Alignment:
| Q |
17 |
cataggttagacggttcatataaacgcatttgcaaaattgttgtaaatgatctcgaccatgtat |
80 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32525304 |
cataggttagacagttcatattaacgcatttgcaaaattgttgtaaacgatctcgaccatgtat |
32525367 |
T |
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