View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_high_2 (Length: 544)
Name: NF14613_high_2
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Original strand, 2066061 - 2066576
Alignment:
| Q |
11 |
atcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaag |
110 |
Q |
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| T |
2066061 |
atcatcatgacttggagttatcctagctaaactctgagtttcttcattgattttgtcttctaataaatctggcatcagaggttgctaaatcagaagaaag |
2066160 |
T |
|
| Q |
111 |
tatgcgccgacaaacattaataattgatgaaaatctaagacactgagtgtatcaccatatatactgtgtaccaacatctttgagttcatctcaaaatcca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2066161 |
tatgcgccgacaaacattaataattgatgaaaatctaagacactgaatgtatgatcatatatactgtgtaccaacatctttgagttcatctcaaaatcca |
2066260 |
T |
|
| Q |
211 |
cattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaagtaacaatgataacccctctcttta |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
2066261 |
cattggttagctgaagatcatatatccattgaagagcatatacttgtttgagtgtctctcctaaatcaacatcaagtaacaatgataatcactctcttta |
2066360 |
T |
|
| Q |
311 |
agccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagagcatccacattacatttatagtgat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2066361 |
agccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagagcatccacattacatttatagcgac |
2066460 |
T |
|
| Q |
411 |
ctgcatttggtttgtgtcaagcatccgtctcaggttgatgagtccgattaagaacgtgggtcttgataagtttgacattgacccaactatttaaaagagt |
510 |
Q |
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| T |
2066461 |
ctgcatttggtttgtgtcaagcatccgtctcaggttgatgagtccgattaagaacgtgggtcttgataagtttgacattgactcaactatttaaaagagt |
2066560 |
T |
|
| Q |
511 |
gtttgtcagttcacaa |
526 |
Q |
| |
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||| |||||||||||| |
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| T |
2066561 |
gttcgtcagttcacaa |
2066576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 290
Target Start/End: Complemental strand, 43234121 - 43233918
Alignment:
| Q |
87 |
agaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattgatg-aaaatctaagacactgagtgtatcaccatatatactgtgtaccaac |
185 |
Q |
| |
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||||||| |||||||||| |||||| | ||||||| ||| ||||||||| | ||||| | ||||| || ||||| |||||| |||| | ||| | | |
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| T |
43234121 |
agaggtttttaaatcagaataaagtaggtaccgacaatcat-aataattgaagcaaaatatgagacaacgaatgtatgaccatagatacgggctacaacc |
43234023 |
T |
|
| Q |
186 |
atctttgagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaa |
285 |
Q |
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| |||||||| ||||||| ||||||||||| |||| || | ||| ||| |||||||||||||||| || |||||| |||||| ||| ||||| ||| |
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| T |
43234022 |
acctttgagtccatctcacaatccacattgaccagctaaaagccatgtattcattgaagagcagacaacagtctgagtgcctctcccaaaccaacaacaa |
43233923 |
T |
|
| Q |
286 |
gtaac |
290 |
Q |
| |
|
||||| |
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|
| T |
43233922 |
gtaac |
43233918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 188 - 405
Target Start/End: Original strand, 15076965 - 15077183
Alignment:
| Q |
188 |
ctttgagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaagt |
287 |
Q |
| |
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|||||||| ||||||||||| |||||| || |||||||||||| | ||| ||||||||| | | || |||||| |||||| ||||||||||||||| |
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| T |
15076965 |
ctttgagtccatctcaaaatgcacatttgtcagctgaaggtcacgaacccactgaagagcaaaaaacagtctgagtgcctctcccaaatcaacatcaagt |
15077064 |
T |
|
| Q |
288 |
aacaatgataacccctctctttaagccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagagc |
387 |
Q |
| |
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|||||||||| | ||| || |||||||||||||||| | |||||||| |||| | |||| ||| ||||||||||||||| |||||||||||||| |
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| T |
15077065 |
aacaatgatagctactccacttcagccaacacaaaacgaccttcatcatctcgaatatatatacaaaggccaactttgtttaacacatgagagaaagaga |
15077164 |
T |
|
| Q |
388 |
a-tccacattacatttata |
405 |
Q |
| |
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| | ||||||||||||||| |
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|
| T |
15077165 |
agttcacattacatttata |
15077183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 2806804 - 2806850
Alignment:
| Q |
91 |
gttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
2806804 |
gttgctaaatcagaagaaagtaagcgccgacaatcattaataattga |
2806850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 16349583 - 16349657
Alignment:
| Q |
63 |
ttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattga |
137 |
Q |
| |
|
|||||| |||| |||||| ||||||||||| |||| |||| |||||||| |||||||| ||||||||||||| |
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| T |
16349583 |
ttgtctcctaacaaatctaacatcagaggttgtcaaattagaataaagtatgtgccgacaatcattaataattga |
16349657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 28031267 - 28031180
Alignment:
| Q |
317 |
cacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagag-catccacattacattta |
403 |
Q |
| |
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|||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
28031267 |
cacaaaacgatcctcatcatcccgaatacacataccaaggtcgactttgtttaacgcatgagagaaagagacatccacattatattta |
28031180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 652033 - 651936
Alignment:
| Q |
311 |
agccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgttta-acgcatgagagaaagag-catccacattacatttatag |
406 |
Q |
| |
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||||||||||||| || |||||||||| | |||||||||||||| |||| |||||| | | | |||||||| || |||||||||||||||||||| |
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| T |
652033 |
agccaacacaaaatgaccctcatcatctcggatgcacataccaaggccaaatttgttgagccccctgagagaagaagacatccacattacatttatag |
651936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 443
Target Start/End: Complemental strand, 28809592 - 28809341
Alignment:
| Q |
192 |
gagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagacacttgtttgagtgtctctcctaaatcaacatcaagtaaca |
291 |
Q |
| |
|
|||| ||| ||||||| |||||| || ||||||| ||| | |||| ||||||||||||| | || ||||||||| || ||||||||||| ||||| |
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| T |
28809592 |
gagtccatttcaaaattcacattaattggctgaagatcacgtttccactgaagagcagacaatagtc-gagtgtctcccccaaatcaacatcgagtaatg |
28809494 |
T |
|
| Q |
292 |
atgataacccctctctttaagccaacacaaaacgatcctcatcatcctgaatgcacataccaagaccaactttgtttaacgcatgagagaaagag-catc |
390 |
Q |
| |
|
|| || | |||| ||| ||| |||||||||||| | ||||| ||| ||| || ||||||| ||||||||| ||| |||||||||||||| |||| |
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|
| T |
28809493 |
ttgctagctactctgttttagctaacacaaaacgaccatcatcttccctaatacatataccaatgccaactttgcttagtgcatgagagaaagaatcatc |
28809394 |
T |
|
| Q |
391 |
cacattacatttatagtgatctgcatttggtttgtgtcaagcatccgtctcag |
443 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| || || ||||||||| |
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|
| T |
28809393 |
cacattacatttatagtgacccccagttggtttgtgccagtcaaccgtctcag |
28809341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 27764016 - 27763941
Alignment:
| Q |
259 |
tgagtgtctctcctaaatcaacatcaagtaacaatgataacccctctctttaagccaacacaaaacgatcctcatc |
334 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | |||| ||| |||||| ||||||||| ||||||| |
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|
| T |
27764016 |
tgagtgtcttccctaaatcaacatcaagtaacaatgatagtcactctgttttagccaatacaaaacgaccctcatc |
27763941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 63 - 252
Target Start/End: Complemental strand, 34899087 - 34898897
Alignment:
| Q |
63 |
ttgtcttctaataaatctggtatcagaggttgctaaatcagaagaaagtatgcgccgacaaacattaataattgatg-aaaatctaagacactgagtgta |
161 |
Q |
| |
|
|||||| |||||||| || |||||| |||| ||||||| ||||||||| ||||||||| ||| ||||||||| | ||||||| ||||| ||| ||| |
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| T |
34899087 |
ttgtctcctaataaacctaacatcagaagttgttaaatcaaaagaaagtagacgccgacaaccatcaataattgaagcaaaatctgagacatcgagcgta |
34898988 |
T |
|
| Q |
162 |
tcaccatatatactgtgtaccaacatctttgagttcatctcaaaatccacattggttagctgaaggtcatatatccattgaagagcagaca |
252 |
Q |
| |
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|||||| ||||| | ||||| | ||||||||| | ||||| |||||| ||| ||||||||||||| ||||| |||| ||||||||| |
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| T |
34898987 |
cgaccatagatactctctaccactacatttgagttcgtttcaaattccacaatggcgagctgaaggtcatgtatccgttgatgagcagaca |
34898897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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