View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_high_3 (Length: 478)
Name: NF14613_high_3
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 3084602 - 3084139
Alignment:
| Q |
1 |
cagagtttgtgtactcttttttgacctgcaagaaatcaaatatcgagcattagaaaacaccgagaatgtcacaacagttaaatataccttttagatctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084602 |
cagagtttgtgtactcttttttgacctgcaagaaatcaaatatcgagcgtcagaaaacaccgagaatgtcacaacagttaaatataccttttagatctgg |
3084503 |
T |
|
| Q |
101 |
ttcaatacttctacgaatttcatgtcaggttcaccatgaagtccttcatgcgtgttacgatataatgtgattctctcattattgtattttatattgtaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3084502 |
ttcaatacttctacgaatttcatgtcaggttcaccatgaagtccttcatacgtgttacgatataatgtgattctctcattattgtattttatattgtaat |
3084403 |
T |
|
| Q |
201 |
tatgttaggattaagttgtccatatgtgtagttaatttctttatttctttgtcttaagaaactaggttaggacttcttcgtccacaagataattatgcct |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3084402 |
tatgttaggattaagtggtccatatgtgtagttaatttctttatttctttgtcttaagaaactaggttaggacttcttcgtccccaagataattatgcct |
3084303 |
T |
|
| Q |
301 |
ttgcagttacatataaaaccctcaagttcagcagtctttaccgtaagcctgaacattctttctctgattgtcccactataaattgtcataactgcatgag |
400 |
Q |
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| T |
3084302 |
ttgcagttacatataaaacc--caagttcagcagtctttaccttaagcctgaacattctttctctgattgtcccactataaattgtcataactgcatgag |
3084205 |
T |
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| Q |
401 |
aaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaacacttaattcagaattg |
466 |
Q |
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| T |
3084204 |
aaagggtcatattgcttcaaactgttgttgatgctgcaagtcacccaaacacttaattcagaattg |
3084139 |
T |
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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 2511435 - 2511496
Alignment:
| Q |
153 |
tgttacgatataatgtgattctctcattattgtattttatattgtaattatgttaggattaa |
214 |
Q |
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| T |
2511435 |
tgttatgatatgttgtgattctctcattattgtattttatattgtaattatgttaggattaa |
2511496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 2510292 - 2510341
Alignment:
| Q |
153 |
tgttacgatataatgtgattctctcattattgtattttatattgtaatta |
202 |
Q |
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| T |
2510292 |
tgttacgatatgttgtgattctctcattattgtattttatattgtaatta |
2510341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 466
Target Start/End: Original strand, 14824530 - 14824745
Alignment:
| Q |
251 |
gtcttaagaaactaggttaggacttcttcgtccacaagataattatgcctttgcagttacatataaaaccctcaagttcagcagtctttaccgtaagcct |
350 |
Q |
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|||| |||||||||| || ||||||||||| | |||||||||| |||||||||||||||| | |||| | ||| || | | ||| || | | || |
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| T |
14824530 |
gtctgaagaaactagattgggacttcttcgccaacaagataatcttgcctttgcagttacaaaaaaaattcccaaattttgtcgagtttgccaaatgact |
14824629 |
T |
|
| Q |
351 |
gaacattctttctctgattgtcccactataaattgtcataactgcatgagaaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaac |
450 |
Q |
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| T |
14824630 |
ggacattcttttcctgattgtcccaatgtagaatgtcataactgcaagaaaaaaggtcatattgcatcaaactgttgtcgatattgcaagacacctggac |
14824729 |
T |
|
| Q |
451 |
acttaattcagaattg |
466 |
Q |
| |
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|||||||||||||||| |
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| T |
14824730 |
acttaattcagaattg |
14824745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 27684379 - 27684464
Alignment:
| Q |
166 |
tgtgattctctcattattgtattttatattgtaattatgttaggattaagttgtccatatgtgtagttaatttctttatttctttgt |
252 |
Q |
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|||||||||||||| |||||||||||||| |||| ||||||||||||| | | |||||||| ||| ||| ||||||||||||| |
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| T |
27684379 |
tgtgattctctcatg-ttgtattttatattataatcatgttaggattaactatcctttatgtgtaattattttatttatttctttgt |
27684464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 53018395 - 53018317
Alignment:
| Q |
388 |
ataactgcatgagaaagggtcacattgcttcaaactgttgttgatgctgcaagtcacccgaacacttaattcagaattg |
466 |
Q |
| |
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|||||||||||| ||||||||| ||| ||||||| |||||| ||| ||||||| || ||| ||||| ||||| ||||| |
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| T |
53018395 |
ataactgcatgaaaaagggtcatattacttcaaattgttgtcgatactgcaagacagccggtcacttgattcaaaattg |
53018317 |
T |
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