View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14613_high_4 (Length: 458)

Name: NF14613_high_4
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14613_high_4
NF14613_high_4
[»] chr4 (14 HSPs)
chr4 (19-445)||(12211225-12211662)
chr4 (276-445)||(31944616-31944792)
chr4 (276-445)||(53693033-53693209)
chr4 (276-445)||(4325412-4325587)
chr4 (275-444)||(55464660-55464836)
chr4 (323-445)||(3074423-3074545)
chr4 (275-399)||(27364882-27365013)
chr4 (355-445)||(1147585-1147675)
chr4 (377-445)||(25182878-25182946)
chr4 (333-445)||(8897925-8898037)
chr4 (271-369)||(42843702-42843807)
chr4 (333-445)||(10632643-10632757)
chr4 (393-433)||(48130099-48130139)
chr4 (393-433)||(30110096-30110136)
[»] chr7 (20 HSPs)
chr7 (275-444)||(27387306-27387482)
chr7 (284-445)||(9230409-9230577)
chr7 (275-445)||(26493713-26493890)
chr7 (275-444)||(19399977-19400153)
chr7 (275-444)||(38575289-38575465)
chr7 (275-445)||(45197643-45197819)
chr7 (276-445)||(23179885-23180060)
chr7 (276-424)||(8638614-8638770)
chr7 (340-442)||(14088819-14088921)
chr7 (340-442)||(14398837-14398939)
chr7 (340-442)||(25491636-25491738)
chr7 (276-370)||(43727996-43728097)
chr7 (286-422)||(18375416-18375557)
chr7 (387-445)||(10224009-10224067)
chr7 (393-441)||(26782317-26782365)
chr7 (276-322)||(23804627-23804673)
chr7 (237-275)||(34224482-34224520)
chr7 (377-445)||(25024631-25024699)
chr7 (377-425)||(9557796-9557844)
chr7 (393-433)||(10868462-10868502)
[»] chr8 (24 HSPs)
chr8 (85-239)||(34228485-34228645)
chr8 (276-445)||(13152393-13152569)
chr8 (275-445)||(30791457-30791634)
chr8 (282-445)||(9256395-9256565)
chr8 (278-445)||(14446834-14447008)
chr8 (276-445)||(16532631-16532806)
chr8 (275-444)||(21958511-21958687)
chr8 (277-445)||(27190772-27190947)
chr8 (276-445)||(24333714-24333893)
chr8 (333-445)||(32359486-32359598)
chr8 (333-440)||(32372022-32372129)
chr8 (333-445)||(32342880-32342992)
chr8 (333-445)||(32355367-32355479)
chr8 (340-445)||(40146009-40146114)
chr8 (325-445)||(10014434-10014554)
chr8 (276-445)||(28846621-28846781)
chr8 (335-441)||(34228232-34228338)
chr8 (378-445)||(42447034-42447101)
chr8 (298-366)||(10467786-10467861)
chr8 (394-445)||(24592336-24592387)
chr8 (394-445)||(10467876-10467927)
chr8 (19-72)||(34228883-34228937)
chr8 (393-434)||(3435409-3435450)
chr8 (384-433)||(40470481-40470529)
[»] scaffold0019 (1 HSPs)
scaffold0019 (271-445)||(134853-135034)
[»] chr1 (20 HSPs)
chr1 (276-445)||(52753819-52753992)
chr1 (276-445)||(9637121-9637297)
chr1 (276-437)||(25017386-25017554)
chr1 (275-442)||(26272931-26273105)
chr1 (276-445)||(14498898-14499073)
chr1 (276-445)||(40864718-40864894)
chr1 (276-445)||(48606611-48606787)
chr1 (342-445)||(17874851-17874954)
chr1 (276-435)||(32379865-32380027)
chr1 (301-445)||(35948977-35949128)
chr1 (276-445)||(30559004-30559180)
chr1 (275-369)||(17127438-17127539)
chr1 (271-412)||(21973820-21973968)
chr1 (393-444)||(11843899-11843950)
chr1 (323-445)||(30054875-30054997)
chr1 (394-448)||(170445-170500)
chr1 (393-433)||(33489827-33489867)
chr1 (393-433)||(41972262-41972302)
chr1 (377-426)||(28463203-28463252)
chr1 (401-445)||(51053101-51053145)
[»] chr5 (14 HSPs)
chr5 (276-442)||(3055482-3055655)
chr5 (271-445)||(203846-204026)
chr5 (276-445)||(23244569-23244745)
chr5 (276-445)||(8785782-8785958)
chr5 (275-413)||(1280377-1280522)
chr5 (276-445)||(11852715-11852891)
chr5 (297-445)||(22712898-22713045)
chr5 (323-445)||(27168802-27168924)
chr5 (325-445)||(2228971-2229091)
chr5 (301-445)||(22541911-22542062)
chr5 (275-425)||(26540674-26540831)
chr5 (333-415)||(19518971-19519053)
chr5 (393-433)||(28801427-28801467)
chr5 (393-433)||(38269402-38269442)
[»] chr3 (16 HSPs)
chr3 (275-444)||(31989028-31989204)
chr3 (91-234)||(33167580-33167729)
chr3 (276-435)||(51261979-51262145)
chr3 (275-444)||(24908393-24908569)
chr3 (275-444)||(53710397-53710573)
chr3 (275-442)||(43137126-43137299)
chr3 (275-442)||(37381871-37382045)
chr3 (279-445)||(3856875-3857048)
chr3 (336-445)||(24988812-24988921)
chr3 (95-184)||(43136509-43136598)
chr3 (276-407)||(15667973-15668111)
chr3 (333-445)||(22934798-22934910)
chr3 (387-444)||(51408609-51408666)
chr3 (377-425)||(38282515-38282563)
chr3 (380-445)||(9743379-9743444)
chr3 (393-439)||(43585933-43585979)
[»] chr2 (19 HSPs)
chr2 (276-445)||(12539574-12539749)
chr2 (275-442)||(19951833-19952007)
chr2 (280-445)||(35649659-35649831)
chr2 (275-442)||(33453190-33453364)
chr2 (276-435)||(34317482-34317642)
chr2 (275-445)||(22483548-22483725)
chr2 (275-445)||(22464669-22464847)
chr2 (275-445)||(34526351-34526529)
chr2 (355-423)||(31392486-31392554)
chr2 (333-445)||(18425956-18426072)
chr2 (387-445)||(13309707-13309765)
chr2 (324-369)||(13308771-13308816)
chr2 (324-445)||(34907640-34907758)
chr2 (396-441)||(7886661-7886706)
chr2 (400-445)||(31392927-31392972)
chr2 (237-278)||(35651564-35651605)
chr2 (393-445)||(26656340-26656392)
chr2 (391-445)||(1954951-1955005)
chr2 (377-433)||(45121340-45121396)
[»] chr6 (11 HSPs)
chr6 (276-444)||(12180525-12180700)
chr6 (280-445)||(11970964-11971135)
chr6 (323-445)||(3050917-3051041)
chr6 (283-445)||(25599159-25599331)
chr6 (275-445)||(24074411-24074588)
chr6 (276-445)||(25340445-25340620)
chr6 (323-444)||(1296563-1296684)
chr6 (323-421)||(30621227-30621324)
chr6 (340-445)||(32441973-32442078)
chr6 (237-279)||(22257696-22257738)
chr6 (244-279)||(24696100-24696135)
[»] scaffold0007 (1 HSPs)
scaffold0007 (275-445)||(259917-260094)
[»] scaffold0178 (1 HSPs)
scaffold0178 (276-445)||(17740-17916)
[»] scaffold0015 (1 HSPs)
scaffold0015 (275-444)||(214161-214337)
[»] scaffold0198 (1 HSPs)
scaffold0198 (323-445)||(1450-1572)
[»] scaffold0726 (1 HSPs)
scaffold0726 (336-445)||(950-1059)
[»] scaffold0002 (1 HSPs)
scaffold0002 (325-442)||(435350-435469)
[»] scaffold0168 (1 HSPs)
scaffold0168 (275-445)||(15813-15991)
[»] scaffold0012 (1 HSPs)
scaffold0012 (275-445)||(197104-197282)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 12211662 - 12211225
Alignment:
Q  19 tttccaactatatttaatgagccgtttcaatttcttcttttactgtcaattaaagtgttaaactaata----atctatggactgttcaacaaatcaaatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||| |||||    
T  12211662 tttccaactatatttaatgagccgtttcaatttcttcttttactgccaattaaagtgttaaactaatatctaatctatggactgttcaacaaattaaatg 12211563  T
Q  115 ctaaaatattaattaatgctgatgagtaattgaatcacatttgttaaccatataggaaggaaatagatattttctaccctttgtttaaaagctaaaagca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||  |||||| ||||||||||||||    
T  12211562 ctaaaatattaattaatgctgatgagtaattgaatcacatttgttaatcatataggaaggaaacaaatattttctacaatttgttaaaaagctaaaagca 12211463  T
Q  215 tgatagagcccgatgaacttaattggttgatagaacaagtattgagaatatgaatgttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgat 314  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12211462 tgacagagcccgatgaacttaattggttgatagaacaagtattgagaatatgaatgttgtgcaacaagatcaacgatgtgtggttcaatgacttgatgat 12211363  T
Q  315 atgtt-------acaggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaat 407  Q
    |||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  12211362 atgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcgaacattcatttcaatgaggtctcgaaaatgacatttacctcctaat 12211263  T
Q  408 tttatttaccacactattgacaggttatatttcatctc 445  Q
    |||||||| ||||||||||  |||||||||||||||||    
T  12211262 tttatttagcacactattggtaggttatatttcatctc 12211225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 31944616 - 31944792
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||| ||||||||||||||    
T  31944616 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgtgagatattcaagtcacttgatgatgttgatattattcgaacattc 31944715  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||||||||| |||| ||||||||||||||||||||||||  |||||||||||| ||||| |||||||||    
T  31944716 accgcaaagaggtctcggaaagggcatttacctcctaattttatttagtacactattgacaagttatgtttcatctc 31944792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 53693209 - 53693033
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||       ||||||| ||||| || |||||||||||||| ||||||||||||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcgaacattc 53693110  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||  ||| ||||||||| |||| ||||| ||||| |||||| ||||| |||||||||| || ||||| |||||||||    
T  53693109 atcgcaaagaggtctcggaaagggcattcacctcttaatttcatttagcacactattggcaagttatgtttcatctc 53693033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 4325412 - 4325587
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||       ||||||| ||||  || |||||||||||||| ||||| ||||||||    
T  4325412 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgggagataatcaacccacttgatgatgttgatattatttgaacattc 4325511  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   | |  | |||||  |||| ||| |||||||||||||||||||| ||||||||||||||||||| || ||||||    
T  4325512 acagc-agaatgtctcagaaagggcaattacctcctaattttatttagcacactattgacaggttatgttgcatctc 4325587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 55464836 - 55464660
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       ||||| | |||||||| |||||||||||||| |||||||||||||    
T  55464836 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcgaacatt 55464737  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || ||||   ||||||  |||| ||||||||||||||||||| |||   |||| |||||||||||||||||    
T  55464736 cactcgaaagaggctacgaaaaaggcatctacctcctaattttatttagcacgtaattggcaggttatatttcatct 55464660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 323 - 445
Target Start/End: Original strand, 3074423 - 3074545
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    ||||||| |||||||| |||||||||||||| ||||| ||||||||||  ||| ||||||||   ||| ||||||| |||||||||||||||| ||||||    
T  3074423 ggagataatcaagtcacttgatgatgttgatattatttgaacattcatcgcaaagaggtctcaggaagggcatttatctcctaattttatttagcacact 3074522  T
Q  423 attgacaggttatatttcatctc 445  Q
    |||| || ||||| |||||||||    
T  3074523 attggcaagttatgtttcatctc 3074545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 275 - 399
Target Start/End: Original strand, 27364882 - 27365013
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    ||||||||||||||  ||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  27364882 gcaacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 27364981  T
Q  368 catttcaatgaggtctcgaaaagagcatttac 399  Q
    ||    || |||||||||||||| ||||||||    
T  27364982 caccgaaaagaggtctcgaaaagggcatttac 27365013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 355 - 445
Target Start/End: Original strand, 1147585 - 1147675
Alignment:
Q  355 ttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||| ||||  |||||||||||| ||||| |||||||||    
T  1147585 ttattcgaacattcattgcaaagaggtctcggaaagagtatttacctcctaattttctttaaaacactattgacaagttatgtttcatctc 1147675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 377 - 445
Target Start/End: Complemental strand, 25182946 - 25182878
Alignment:
Q  377 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||||||||||||| | |||||||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  25182946 gaggtctcgaaaagggtatttaccttctaattttatttagcacactattgataggttatatttcatctc 25182878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 8898037 - 8897925
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 432  Q
    |||||| | |||||||||||| |||||||| ||||||   ||| ||||||||  |||||  |||||||||||||||||||||| || |||||||  || |    
T  8898037 aagtcactggatgatgttgatattattcgagcattcaccgcaaagaggtctcagaaagactatttacctcctaattttatttagcaaactattggtagtt 8897938  T
Q  433 tatatttcatctc 445  Q
    |||||||||||||    
T  8897937 tatatttcatctc 8897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 42843702 - 42843807
Alignment:
Q  271 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 363  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||||||||| |        ||||||||||||||| |||||||||||||| ||| |||||    
T  42843702 ttgtgcaacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatattaatcgaa 42843801  T
Q  364 cattca 369  Q
    ||||||    
T  42843802 cattca 42843807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 10632757 - 10632643
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacatt--catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacag 430  Q
    |||||| ||||||||||| || |||||||||||||  ||   ||| || |||||| ||| | ||||||||||||||||||||||  ||||||||||  ||    
T  10632757 aagtcacttgatgatgttaatgttattcgaacattttcaccgcaaagaagtctcggaaatatcatttacctcctaattttattttgcacactattggtag 10632658  T
Q  431 gttatatttcatctc 445  Q
     ||||||||||||||    
T  10632657 cttatatttcatctc 10632643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 48130099 - 48130139
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  48130099 catttacctcctaattttatttagcacactattgacgggtt 48130139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 30110096 - 30110136
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    |||||||| |||||||||||||| |||||||||||| ||||    
T  30110096 catttaccacctaattttatttagcacactattgacgggtt 30110136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 27387482 - 27387306
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  27387482 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 27387383  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || |||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  27387382 cactcgaaagaggtcgcggaaagagcatttacctcctaattttatttagcacgctattgacaggttatatttcatct 27387306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 284 - 445
Target Start/End: Original strand, 9230409 - 9230577
Alignment:
Q  284 tcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaat 376  Q
    |||||||||||| ||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||||||  |||     
T  9230409 tcaacgatgtgtggttcaatgacttgatgatatgttacatagagcgggagatactcaagtcatttgatgatgttgatattattcgaacattcatcgcaaa 9230508  T
Q  377 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||||||||| | ||| |||||||||    
T  9230509 gaggtatcgaaaagggcatttacctcctaattttatttagcacactattgacaaggtatgtttcatctc 9230577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 275 - 445
Target Start/End: Complemental strand, 26493890 - 26493713
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| |||||| ||| ||||||||||||||| ||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  26493890 gcaacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 26493791  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||    || ||||||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  26493790 caccgtaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgacaggttatatttcatctc 26493713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 275 - 444
Target Start/End: Original strand, 19399977 - 19400153
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||  |||||||||||||| |||||||||||||    
T  19399977 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacatt 19400076  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || |||||| || |||| | |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  19400077 cactcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattggcaggttatatttcatct 19400153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 38575465 - 38575289
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    ||||||| |||||| ||| || ||| || |||||||||||||||||||       ||||||||| |||||| |||||||||||||| |||||||||||||    
T  38575465 gcaacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcgaacatt 38575366  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || |||||| || ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  38575365 cactcgaaagaggtcgcggaaagaacatttacctcctaattttatttagcacgctattgacaggttatatttcatct 38575289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 45197643 - 45197819
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgtta------caggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||| |||||| |||||||||||||||||||| ||       |||||||||||||||||| |||| ||||||||| || |||||||||||    
T  45197643 gcaacaagatcaacaatgtgtggttcaatgacttgatgatatattcatcgagcaggagatattcaagtcacttgacgatgttgatattgttcgaacattc 45197742  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| |||||||||   || |||||||| ||||||||||||||| ||| ||||||  |||||||||||||||||    
T  45197743 accacaaagaggtctcggggagggcatttacatcctaattttatttagcaccctattggtaggttatatttcatctc 45197819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 23180060 - 23179885
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||        |||||||||||| || ||||| |||||||| ||||||||||||||    
T  23180060 caacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaaggcacttgataatgttgatattattcgaacattc 23179961  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||||||| | |||| ||||||| |||||||||| ||||| ||||||||||||| ||||| |||||||||    
T  23179960 accgcaaagaggtcttggaaagggcattta-ctcctaatttaatttagcacactattgacaagttatgtttcatctc 23179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 276 - 424
Target Start/End: Original strand, 8638614 - 8638770
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtta-------caggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||       || |||||||||||||||||||||||| | ||| ||||||||||||||    
T  8638614 caacaagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcgatattattcgaacattc 8638713  T
Q  369 atttcaatga-ggtctcgaaaagagcatttacctcctaattttatttaccacactat 424  Q
    |   ||| || ||||||| |||| |||||||||||||||||||||||| ||||||||    
T  8638714 aacgcaaagagggtctcggaaagggcatttacctcctaattttatttagcacactat 8638770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 442
Target Start/End: Original strand, 14088819 - 14088921
Alignment:
Q  340 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 439  Q
    ||||||||| |||| |||||| ||||| |||  ||| ||||||||| |||  |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  14088819 ttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttatattt 14088918  T
Q  440 cat 442  Q
    |||    
T  14088919 cat 14088921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 442
Target Start/End: Original strand, 14398837 - 14398939
Alignment:
Q  340 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 439  Q
    ||||||||| |||| |||||| ||||| |||  ||| ||||||||| |||  |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  14398837 ttgatgatgctgatattattcaaacatccatcgcaaagaggtctcggaaaaggcatttacctcctaattttatttagcacactattgacaagttatattt 14398936  T
Q  440 cat 442  Q
    |||    
T  14398937 cat 14398939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 442
Target Start/End: Complemental strand, 25491738 - 25491636
Alignment:
Q  340 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 439  Q
    |||||||||||||| ||||||||||||||| |  || |||||||| ||||  |||||||| |||| |||||||||| ||||||||||||| |||||||||    
T  25491738 ttgatgatgttgatattattcgaacattcactgtaaagaggtctcaaaaaaggcatttacttcctgattttatttatcacactattgacatgttatattt 25491639  T
Q  440 cat 442  Q
    |||    
T  25491638 cat 25491636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 43727996 - 43728097
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtt-------acaggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||| |||||||||||||| |||||||||||||||||||||||       || |||||||||||||||| |||||||||||||| |||||| |||||||    
T  43727996 caacatgatcaacgatgtgtggttcaatgacttgatgatatgttatatcgaacgggagatattcaagtcagttgatgatgttgatattattcaaacattc 43728095  T
Q  369 at 370  Q
    ||    
T  43728096 at 43728097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 18375416 - 18375557
Alignment:
Q  286 aacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatga 378  Q
    |||||||||| |||||||||||||||||||| |||||       |||||||||||| ||| | ||| |||||||| ||||||||||||||||   ||  |    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcgaacattcatgcgaa--a 18375513  T
Q  379 ggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||| |||||||| ||||||||  ||||| ||||||    
T  18375514 ggtctcgaaaagggcatttacttcctaattcgatttagcacact 18375557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 10224009 - 10224067
Alignment:
Q  387 aaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||    
T  10224009 aaagaccatttacctcctaattttatttaccacactatcggcagattatatttcatctc 10224067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 26782365 - 26782317
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggttatatttca 441  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  26782365 catttacctcctaattttatttagcacactattgacaagttatgtttca 26782317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 23804673 - 23804627
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca 322  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||    
T  23804673 caacaagatcaacgatgtgtggttcaatgacttgttgatatattaca 23804627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 275
Target Start/End: Complemental strand, 34224520 - 34224482
Alignment:
Q  237 ttggttgatagaacaagtattgagaatatgaatgttgtg 275  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  34224520 ttggttgataaaacaagtattgagaatatgaatgttgtg 34224482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 25024631 - 25024699
Alignment:
Q  377 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||  |||| |||||||||||||||||||||| | ||   |||||||| |||||||||||||||    
T  25024631 gaggtctcagaaagggcatttacctcctaattttattaagcatgttattgacatgttatatttcatctc 25024699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 9557796 - 9557844
Alignment:
Q  377 gaggtctcgaaaagagcatttacctcctaattttatttaccacactatt 425  Q
    ||||||||  |||| | |||||||||||||||||||||| |||||||||    
T  9557796 gaggtctctgaaaggggatttacctcctaattttatttagcacactatt 9557844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 10868502 - 10868462
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  10868502 catttacctcctaattttatttagcacacttttgacgggtt 10868462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 34228645 - 34228485
Alignment:
Q  85 taatctatggactgttcaacaaatcaaatgctaaaatattaattaatgctgatgagtaattgaatcacatttgttaaccatataggaaggaaatagatat 184  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  34228645 taatctatggactgttcagcaaactaaatgctaaaatattaattaatgttgatgagtaattgaatcacatttgttaatcctataggaaggaaatagatat 34228546  T
Q  185 ------tttctaccctttgtttaaaagctaaaagcatgatagagcccgatgaacttaattg 239  Q
          ||||||||||||||||||||||||||||||||| | | || ||||||||||||||    
T  34228545 gatgaatttctaccctttgtttaaaagctaaaagcatgacaaaacctgatgaacttaattg 34228485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 13152569 - 13152393
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| | |||||| |||||||    
T  13152569 caacatgatcaacgctgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttggtattattccaacattc 13152470  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||  ||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  13152469 atcgcaaagaggtctcggaaagggcatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 13152393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 275 - 445
Target Start/End: Complemental strand, 30791634 - 30791457
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||  ||| || ||||||||||||||||||||||||||       |||||||||||||||| |||||||  ||||| |||||||||||||    
T  30791634 gcaacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcgaacatt 30791535  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||   ||| ||||||||| |||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  30791534 caccgcaaagaggtctcggaaagggcatttaccacctaattttatttagcacgctattgacaggttatatttcatctc 30791457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 282 - 445
Target Start/End: Original strand, 9256395 - 9256565
Alignment:
Q  282 gatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttca 374  Q
    |||||| ||||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| | ||||||||||||||  ||    
T  9256395 gatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatataattcgaacattcatcgca 9256494  T
Q  375 atgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    | ||||||||| |||   ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  9256495 aagaggtctcgcaaatgacatttacctcctaattttatttagcacactattgacaagttatgtttcatctc 9256565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 278 - 445
Target Start/End: Original strand, 14446834 - 14447008
Alignment:
Q  278 acaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattcat 370  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||        ||||||||||||||| |||||||||||||| |||||| ||||||||     
T  14446834 acaagatcaacgatttgtggttcaatgacttgatgatatgttacaccaagagagagatattcaagtcacttgatgatgttgatattattctaacattcac 14446933  T
Q  371 ttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    | ||| ||||||||| ||||  |||| |||||||||||||||||| |||||||||||  ||||| ||||||||||    
T  14446934 tgcaaagaggtctcggaaaggacattcacctcctaattttatttagcacactattgatcggttacatttcatctc 14447008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 16532806 - 16532631
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |        ||||||||||||||| |||||||||||||| |||||| |||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatattattcaaacattc 16532707  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||| | ||| |||| |||||||||||||||||||||||| ||| |||||| | ||||||||||||||||    
T  16532706 accgcaaagagatatcggaaagggcatttacctcctaattttatttagcacgctattg-ctggttatatttcatctc 16532631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 444
Target Start/End: Original strand, 21958511 - 21958687
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| || ||| ||| ||||||||||||||||||||||       |||||||||| ||||| |||||||||||||| |||||||||||||    
T  21958511 gcaacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatt 21958610  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
     | |  || |||||| || |||| | |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  21958611 aactcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 21958687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 445
Target Start/End: Original strand, 27190772 - 27190947
Alignment:
Q  277 aacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattca 369  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||       |||||||||||||||| |||||||||||||| ||| ||||| |||||    
T  27190772 aacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttgatattactcgaatattca 27190871  T
Q  370 tttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
       ||| || |||||  ||||  |||||||||||||||||||||||  ||||||||| || ||||| |||||||||    
T  27190872 ccgcaaagatgtctcagaaaggacatttacctcctaattttatttagtacactattggcaagttatgtttcatctc 27190947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 24333714 - 24333893
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt- 367  Q
    |||||||||||||||||| |  ||||||||||| |||||||||||||       |||||||||||||||| ||||||||||| || |||||||||||||     
T  24333714 caacaagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaagtcacttgatgatgttaatattattcgaacatta 24333813  T
Q  368 --catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
      ||   ||| ||||||||| |||||| ||||||||| | |||||||||| |||||||||||| |||||| |||||||||    
T  24333814 ttcaccacaaagaggtctcggaaagagaatttacctcatgattttatttagcacactattgaccggttatgtttcatctc 24333893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 32359486 - 32359598
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 432  Q
    |||||| |||||||||||||| ||||||||||||||| | ||| |||||||| ||||   ||||||||||||||||||||||| ||||||||||  || |    
T  32359486 aagtcacttgatgatgttgatattattcgaacattcactgcaaagaggtctcaaaaatgtcatttacctcctaattttatttagcacactattggtagat 32359585  T
Q  433 tatatttcatctc 445  Q
    |||||||||||||    
T  32359586 tatatttcatctc 32359598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 32372022 - 32372129
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 432  Q
    |||||| |||||||||||||| |||||||||||||||   ||| |||||||| |||||  ||||||||||||||||||||||| ||||||||||  ||||    
T  32372022 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtctcaaaaaggtcatttacctcctaattttatttagcacactattggtaggt 32372121  T
Q  433 tatatttc 440  Q
    ||||||||    
T  32372122 tatatttc 32372129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 32342880 - 32342992
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 432  Q
    |||||| |||||||||||||| ||||||||||||||| | |||  ||||||| |||||  ||||||||||||||||||||||| ||||| ||||  | ||    
T  32342880 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32342979  T
Q  433 tatatttcatctc 445  Q
    |||||||||||||    
T  32342980 tatatttcatctc 32342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 32355367 - 32355479
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 432  Q
    |||||| |||||||||||||| ||||||||||||||| | |||  ||||||| |||||  ||||||||||||||||||||||| ||||| ||||  | ||    
T  32355367 aagtcacttgatgatgttgatattattcgaacattcactgcaaaaaggtctcaaaaaggtcatttacctcctaattttatttagcacaccattggtatgt 32355466  T
Q  433 tatatttcatctc 445  Q
    |||||||||||||    
T  32355467 tatatttcatctc 32355479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 340 - 445
Target Start/End: Complemental strand, 40146114 - 40146009
Alignment:
Q  340 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 439  Q
    |||||||||||||| |||||||||||||||   ||| ||||||||| |||  |||| ||||||||||||||||||| |||||||||| ||| |||| |||    
T  40146114 ttgatgatgttgatattattcgaacattcacaacaaagaggtctcggaaatggcatctacctcctaattttatttagcacactattggcagattatgttt 40146015  T
Q  440 catctc 445  Q
    ||||||    
T  40146014 catctc 40146009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 445
Target Start/End: Complemental strand, 10014554 - 10014434
Alignment:
Q  325 agatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactat 424  Q
    ||||||||| |||| |||||||||||||| |||||| ||||||||    || ||| | | | |||| |||||||||||||||||||||||| |||| |||    
T  10014554 agatattcatgtcacttgatgatgttgatattattcaaacattcaccggaaagagattttggaaagggcatttacctcctaattttatttagcacattat 10014455  T
Q  425 tgacaggttatatttcatctc 445  Q
    |||||  ||||||||||||||    
T  10014454 tgacatattatatttcatctc 10014434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 28846621 - 28846781
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgat----atgttacaggagatattcaagtcatttgatgatgttgattttattcgaacattcatt 371  Q
    |||||||||||||||||||| ||||||||||||||||||    ||    | |||||||||||||||| |||||||||||||| |||||||||||||||      
T  28846621 caacaagatcaacgatgtgtggttcaatgacttgatgatgtacatcgagcgggagatattcaagtcacttgatgatgttgatattattcgaacattcac- 28846719  T
Q  372 tcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
                || |||| ||||||||||| |||||||||||| |||||| ||||||| |||| |||||||||    
T  28846720 ------------cgcaaagggcatttacctcataattttatttagcacacttttgacagattatgtttcatctc 28846781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 441
Target Start/End: Complemental strand, 34228338 - 34228232
Alignment:
Q  335 gtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggtta 434  Q
    |||| |||||||||||||| ||||||||||||| |   ||| ||||||| | |||  ||||||||||||| |||||||||| |||| |||||||| ||||    
T  34228338 gtcacttgatgatgttgatattattcgaacatttaccacaaagaggtcttggaaattgcatttacctcctcattttatttatcacattattgacatgtta 34228239  T
Q  435 tatttca 441  Q
    |||||||    
T  34228238 tatttca 34228232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 378 - 445
Target Start/End: Original strand, 42447034 - 42447101
Alignment:
Q  378 aggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||| |||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  42447034 aggtatcgaaaaatgcatttacctcctaattttatttagcacactaatgacaagttatatttcatctc 42447101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 10467786 - 10467861
Alignment:
Q  298 ttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacat 366  Q
    |||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||| ||||||||||||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcgaacat 10467861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 445
Target Start/End: Complemental strand, 24592387 - 24592336
Alignment:
Q  394 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||||||    
T  24592387 atttacctcctaattttatttagcacactattggcaggttatgtttcatctc 24592336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 10467876 - 10467927
Alignment:
Q  394 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||| |||||||||||| |||| |||||||| ||||| |||||||||    
T  10467876 atttacctcataattttatttagcacaatattgacaagttatgtttcatctc 10467927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 34228937 - 34228883
Alignment:
Q  19 tttccaactatatttaatg-agccgtttcaatttcttcttttactgtcaattaaa 72  Q
    ||||||||||||||||||| |||| |||||||||||||||  || ||||||||||    
T  34228937 tttccaactatatttaatgaagccatttcaatttcttcttccacagtcaattaaa 34228883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 3435409 - 3435450
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtta 434  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  3435409 catttacctcctaactttatttagcacactattgacgggtta 3435450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 40470529 - 40470481
Alignment:
Q  384 cgaaaagagcatttacctcctaattttatttaccacactattgacaggtt 433  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||| ||||    
T  40470529 cgaaaaga-catttaccttctaattttatttagcacactattgacgggtt 40470481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 271 - 445
Target Start/End: Complemental strand, 135034 - 134853
Alignment:
Q  271 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 363  Q
    |||||||||||||| ||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||    
T  135034 ttgtgcaacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaa 134935  T
Q  364 cattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||    || ||||||||| |||| |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||    
T  134934 cattcaccggaaagaggtctcggaaagggcatttacctcctaattttatttagcacgctattgataggttatatttcatctc 134853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 52753992 - 52753819
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  52753992 caacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattcaagtcatttgatgatgttgatattattcgaacattc 52753893  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
        ||| ||||||||| |||| | ||||||||||||||||||| || ||||||||||||| ||||| |||||||||    
T  52753892 ---gcaaagaggtctcggaaagggtatttacctcctaattttatctagcacactattgacaagttatgtttcatctc 52753819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 9637121 - 9637297
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||       || ||||||||||||| |||||||||||||| ||||| ||||||||    
T  9637121 caacaagatcaatgatgcgtggttcaatgacttgatgatatgttacaccgagcgggtgatattcaagtcacttgatgatgttgatattatttgaacattc 9637220  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||||||||| |||| |||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||    
T  9637221 accgcaaagaggtctcggaaagggcatttacatcctaattttatttagcacactattgataggttatgtttcatctc 9637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 276 - 437
Target Start/End: Original strand, 25017386 - 25017554
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||        ||||||||||| ||| |||||||||||||| |||||||||| |||    
T  25017386 caacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgagcgagagatattcaaatcacttgatgatgttgatattattcgaacgttc 25017485  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatat 437  Q
    |   ||| ||||||||  |||| |||| ||||||||||||||||||| |||||||||||||||||||||    
T  25017486 accgcaaagaggtctcagaaagggcatatacctcctaattttatttagcacactattgacaggttatat 25017554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 442
Target Start/End: Complemental strand, 26273105 - 26272931
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||||||       ||||||||||||||||  |||||||||| || |||||||||||||    
T  26273105 gcaacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcgaacatt 26273006  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 442  Q
    |||  |||  |||||||| |||| ||| |||||| ||||||||||||| |||||||||| || ||||||||||||    
T  26273005 catcgcaaacaggtctcggaaagggcaattacctactaattttatttagcacactattggcatgttatatttcat 26272931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 14498898 - 14499073
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||| |||||||||| ||| || ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  14498898 caacatgatcaacgatttgtggt-caatgacttgatgatatcttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattc 14498996  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||  ||| ||||||||  ||||  |||||||||||||||| ||||||  |||||||||||| ||||| |||||||||    
T  14498997 atcgcaaagaggtctcagaaaggacatttacctcctaattatatttaaaacactattgacaagttatgtttcatctc 14499073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 40864894 - 40864718
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||        | ||||||||||||| ||||| |||||||| ||||||||||||||    
T  40864894 caacaagatcaacgatgtgtggttcaatgacttgatgatatcttacaccgaacgagggatattcaagtcacttgataatgttgatattattcgaacattc 40864795  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||||| |   |||| |||||||||||||||||||||||| ||||||||| ||||||||| || ||||||    
T  40864794 accgcaaagaggttttagaaagggcatttacctcctaattttatttagcacactattaacaggttatgttacatctc 40864718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 48606787 - 48606611
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||| | ||||| |||||||| |||||| |||| ||    
T  48606787 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtaacttgataatgttgatattattcaaacactc 48606688  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| |||||||   |||| ||||||||||| |||||||||||| |||||||||| ||| |||| |||||||||    
T  48606687 accgcaaagaggtcttcgaaagggcatttacctcataattttatttagcacactattggcagattatgtttcatctc 48606611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 342 - 445
Target Start/End: Original strand, 17874851 - 17874954
Alignment:
Q  342 gatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttca 441  Q
    |||||||||||| |||||| ||||||||   ||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  17874851 gatgatgttgatattattcaaacattcaccgcaaagaggtctcgaaaagatcatttaccttctaattttatttaccacactattgacagattatatttca 17874950  T
Q  442 tctc 445  Q
    ||||    
T  17874951 tctc 17874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 435
Target Start/End: Complemental strand, 32380027 - 32379865
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| |||||||||||||||   ||||||||       |||||||||||| ||| |||||||||||||| |||||||||||||     
T  32380027 caacaagatcaacgatgtgtggttcaatgacttgat---atgttacaccaaacgggagatattcaattcacttgatgatgttgatattattcgaacattt 32379931  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 435  Q
    |   ||| ||||| |||||||   ||||||||||||||||||||||| |||||||||||||||||||    
T  32379930 acg-caaagaggtatcgaaaatgacatttacctcctaattttatttagcacactattgacaggttat 32379865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 301 - 445
Target Start/End: Complemental strand, 35949128 - 35948977
Alignment:
Q  301 aatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagc 393  Q
    ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||||    || ||||||||| ||||  |    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcgaacattcaccgaaaagaggtctcggaaaggac 35949029  T
Q  394 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||||||||||||||||||||  ||| |||| || || ||||||||||||||    
T  35949028 atttacctcctaattttattttgcacgctatagatagattatatttcatctc 35948977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 30559180 - 30559004
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||        ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  30559180 caacaagatcaacgatgtgtggttctatgacttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgctgatattattcgaacattc 30559081  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |    ||  || ||||  |||    |||||||||||||||||||||| ||||||||||  || |||| |||||||||    
T  30559080 accgtaaatagatctcataaatgatatttacctcctaattttatttagcacactattggtagattatgtttcatctc 30559004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 369
Target Start/End: Original strand, 17127438 - 17127539
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||  |||||||||||||| |||||||||||||    
T  17127438 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcgaacatt 17127537  T
Q  368 ca 369  Q
    ||    
T  17127538 ca 17127539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 412
Target Start/End: Complemental strand, 21973968 - 21973820
Alignment:
Q  271 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 363  Q
    |||||||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||    
T  21973968 ttgtgcaacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcgaa 21973869  T
Q  364 cattcatttcaatgaggtctcgaaaagagcatttacctcctaattttat 412  Q
    ||||||   ||| ||  ||||| |||| |||||||||||||||||||||    
T  21973868 cattcaccgcaaagaaatctcggaaagggcatttacctcctaattttat 21973820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 444
Target Start/End: Complemental strand, 11843950 - 11843899
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  11843950 catttacctcctaattttatttagcacactattggtaggttatatttcatct 11843899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 323 - 445
Target Start/End: Original strand, 30054875 - 30054997
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||||||| ||||| || ||||  |||||||||| |||    ||| ||||| ||  |||   ||||||||||||||||||||||| |||| |    
T  30054875 ggagatattcaagtcacttgatcatattgacattattcgaaccttctccgcaaagaggtatcataaatgacatttacctcctaattttatttagcacatt 30054974  T
Q  423 attgacaggttatatttcatctc 445  Q
    ||||||| ||||| |||||||||    
T  30054975 attgacacgttatgtttcatctc 30054997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 170500 - 170445
Alignment:
Q  394 atttacctcctaattttatttaccacactattgac-aggttatatttcatctcact 448  Q
    |||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||    
T  170500 atttacctcctaattttatttagcacattattggcaaggttatatttcatctcact 170445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 33489827 - 33489867
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  33489827 catttacctcctaattttatttagcacactattgacgggtt 33489867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 41972302 - 41972262
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  41972302 catttacctcctaattttatttagcacactattgacgggtt 41972262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 28463203 - 28463252
Alignment:
Q  377 gaggtctcgaaaagagcatttacctcctaattttatttaccacactattg 426  Q
    ||||||| | |||| ||||| |||||||||||||||||| ||||||||||    
T  28463203 gaggtcttggaaagggcattcacctcctaattttatttagcacactattg 28463252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 51053101 - 51053145
Alignment:
Q  401 tcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||||||||| ||||||||||| || |||||||| |||||    
T  51053101 tcctaattttatttagcacactattgagagattatattttatctc 51053145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 276 - 442
Target Start/End: Original strand, 3055482 - 3055655
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| ||||||||||||||    
T  3055482 caacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttgatgatgttgatattattcgaacattc 3055581  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 442  Q
        ||||||||||||  |||  |||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  3055582 cgcgcaatgaggtctcataaatggcatttacctcctaattttatttagcacactattgacaatttatgtttcat 3055655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 445
Target Start/End: Original strand, 203846 - 204026
Alignment:
Q  271 ttgtgcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaa 363  Q
    |||||||||||||||||| ||||||| |  ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||    
T  203846 ttgtgcaacaagatcaacaatgtgta-taaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaa 203944  T
Q  364 cattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||    || ||||||||| ||||  ||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  203945 cattcaccggaaagaggtctcggaaaggacatttacctcctaattttatttagcacactattgacaaattatatttcatctc 204026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 445
Target Start/End: Complemental strand, 23244745 - 23244569
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtta-------caggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| ||||||||||||||||||||||||       | | || ||||| ||||| |||||||||||||| ||||| |||||||     
T  23244745 caacaagatcaacgatgtgtcgttcaatgacttgatgatatgttatgtcgagcggaagttattctagtcacttgatgatgttgatattatttgaacatta 23244646  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||||||||  |||| |||| ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  23244645 accgcaacgaggtctcagaaagggcatgtacctgctaattttatttaccacactattgacagattatatttcatctc 23244569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 8785782 - 8785958
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||||       |||||||||||| ||| |||||||| ||||| ||||||||||||||    
T  8785782 caacaagatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattgatattattcgaacattc 8785881  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   |||  ||||||||||||| |   |||||||||||||||||||| || | |||||||||||||| |||||||||    
T  8785882 accgcaaataggtctcgaaaagggttcttacctcctaattttatttagcatattattgacaggttatgtttcatctc 8785958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 275 - 413
Target Start/End: Original strand, 1280377 - 1280522
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||| ||||||||| |||||| ||||||||| ||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  1280377 gcaataagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 1280476  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatt 413  Q
    ||   ||| ||||||||| |||  ||||||||||||||||||||||    
T  1280477 caccgcaaagaggtctcggaaaaggcatttacctcctaattttatt 1280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 11852715 - 11852891
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||       ||||||||| || ||| |||||||||||||| |||||||||||||     
T  11852715 caacaagatgaaagatgtgtggttcaatgacttgatgatatgttacaccgaacgggagatatttaactcacttgatgatgttgatattattcgaacattt 11852814  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| |||||||   |||||| |||||||| ||||||||||||| |||||||||||||  |||| |||||||||    
T  11852815 aacacaaagaggtctaagaaagagtatttaccttctaattttatttagcacactattgacaaattatctttcatctc 11852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 445
Target Start/End: Complemental strand, 22713045 - 22712898
Alignment:
Q  297 gttcaatgacttgatgatatgttacaggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatt 396  Q
    |||||||||||||||||||||   | || |||||||| |||| |||||||||||||| |||||| ||||||||   ||| ||||||||  ||||||||||    
T  22713045 gttcaatgacttgatgatatgag-cgggggatattcatgtcacttgatgatgttgatattattcaaacattcaccgcaaagaggtctcagaaagagcatt 22712947  T
Q  397 tacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||||||||||||| |||||||||| || ||||| || ||||||    
T  22712946 tacctcctaattttatttagcacactattgtcatgttatgttacatctc 22712898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 445
Target Start/End: Complemental strand, 27168924 - 27168802
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||||||| ||||| |||||||| |||||||||||||||    |||||||||||  |||| |||||||||||||||||||||||| ||||||    
T  27168924 ggagatattcaagtcacttgataatgttgatattattcgaacattcaccgaaatgaggtctcataaagggcatttacctcctaattttatttagcacact 27168825  T
Q  423 attgacaggttatatttcatctc 445  Q
    ||||   |||||| |||||||||    
T  27168824 attggatggttatgtttcatctc 27168802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 325 - 445
Target Start/End: Original strand, 2228971 - 2229091
Alignment:
Q  325 agatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaa-aagagcatttacctcctaattttatttaccacacta 423  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||||  ||| ||||| || |  ||| |||||||||||||||||||||||| ||| |||    
T  2228971 agatatttaagtcatttgatgatgttgatattatttgaacattcatcgcaaagaggt-tctaggaagggcatttacctcctaattttatttagcacgcta 2229069  T
Q  424 ttgacaggttatatttcatctc 445  Q
    |||  |||||||||||||||||    
T  2229070 ttggtaggttatatttcatctc 2229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 301 - 445
Target Start/End: Original strand, 22541911 - 22542062
Alignment:
Q  301 aatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagc 393  Q
    ||||||||||||||||||||||       | |||||||||||||| | ||||||||| || ||||||||||||||  |  || |||||| || |||| ||    
T  22541911 aatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcgaacattccctcgaaagaggtcgcggaaagggc 22542010  T
Q  394 atttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||| |||||||||||| ||| |||||| ||||||||||||| ||||    
T  22542011 atttacctcataattttatttagcacgctattgtcaggttatatttcttctc 22542062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 425
Target Start/End: Complemental strand, 26540831 - 26540674
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  26540831 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 26540732  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactatt 425  Q
    ||   ||| ||  ||||  |||| ||||||||||||||||||||| || ||| |||||    
T  26540731 caccgcaaagaaatctcagaaagggcatttacctcctaattttatctagcacgctatt 26540674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 19519053 - 19518971
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttattta 415  Q
    |||||| |||||||||||||| |||||||||||||||   ||| ||||| | | ||||  |||||||| ||||||||||||||    
T  19519053 aagtcacttgatgatgttgatattattcgaacattcaccgcaaagaggtattggaaaggtcatttaccacctaattttattta 19518971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Original strand, 28801427 - 28801467
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    |||||| |||||||||||||||| | |||||||||||||||    
T  28801427 catttaactcctaattttatttagctcactattgacaggtt 28801467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 433
Target Start/End: Complemental strand, 38269442 - 38269402
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggtt 433  Q
    ||||||||||||||||||||||  |||||||||| ||||||    
T  38269442 catttacctcctaattttatttggcacactattggcaggtt 38269402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 275 - 444
Target Start/End: Original strand, 31989028 - 31989204
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  31989028 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 31989127  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || |||||| || |||| |||||||||||||||||||||||| ||| | ||| ||||||||||||||||||    
T  31989128 cactcgaaagaggtcgcggaaagggcatttacctcctaattttatttagcacgccattaacaggttatatttcatct 31989204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 33167729 - 33167580
Alignment:
Q  91 atggactgttcaacaaatcaaatgctaaaatattaattaatgctgatgagtaattgaatcacatttgttaaccatataggaaggaaatagatat------ 184  Q
    |||||||||||| ||||  |||||||||||||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||| ||||||          
T  33167729 atggactgttcagcaaaataaatgctaaaatattaattaatgctgttgagtaatcgaatcacatttgttaatcctataggaaggaaagagatatgatgaa 33167630  T
Q  185 tttctaccctttgtttaaaagctaaaagcatgatagagcccgatgaactt 234  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  33167629 tttctaccctttgtttaaaagctaaaagcatgacagagcctgatgaactt 33167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 276 - 435
Target Start/End: Original strand, 51261979 - 51262145
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    ||||||||||||||| |||| || |||||| ||||||||||||||||       | |||||||||||||| |||||||||||||| ||||||||||||||    
T  51261979 caacaagatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttgatgatgttgatattattcgaacattc 51262078  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 435  Q
    ||   || ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  51262079 atcgtaaagaggtcttgaaaagaacatttacctcctaattttatttagcacactattgacaggttat 51262145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 24908569 - 24908393
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||||       |||||||||||||||  |||| ||||||||| |||||||||||||    
T  24908569 gcaacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcgaacatt 24908470  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || |||||| || |||| | |||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  24908469 cactcgaaagaggtcgcggaaagggtatttacctcctaattttatttagcacgctattcacaggttatatttcatct 24908393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 275 - 444
Target Start/End: Original strand, 53710397 - 53710573
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||  | ||| |||||||||||||| |||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  53710397 gcaacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 53710496  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    || |  || |||||| || |||| |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  53710497 cactcgaaagaggtcacggaaagggcatttacctcctaattttatttagcacgctattgacaggttatattttatct 53710573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 275 - 442
Target Start/End: Original strand, 43137126 - 43137299
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||| |||||||||||||    
T  43137126 gcaacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatt 43137225  T
Q  368 catttcaatgaggtctc-gaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 442  Q
    |    ||| |||||||| |||||| | |||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  43137226 cgccgcaa-gaggtctcagaaaag-gtatttacctcctaattttatttagcacactattggcagattatatttcat 43137299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 442
Target Start/End: Complemental strand, 37382045 - 37381871
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    ||||||||||||||||||||| ||| ||||||| |||||||| |||||        ||||||||||||||||||||||||||| || |||||||||||||    
T  37382045 gcaacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcgaacatt 37381946  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 442  Q
    || | ||| ||||||||| |||   ||||| ||||||||||||||| | ||| ||||||||||||||||||||||    
T  37381945 cactgcaaagaggtctcggaaatgacatttgcctcctaattttattcagcacgctattgacaggttatatttcat 37381871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 445
Target Start/End: Complemental strand, 3857048 - 3856875
Alignment:
Q  279 caagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcatt 371  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||        ||||||||||||||||||||||||||||||| |||||| ||||||||      
T  3857048 caagatcaacgatgtgtggttaaatgacttgatgacatgttactcagagtgggagatattcaagtcatttgatgatgttgatattattcaaacattcacc 3856949  T
Q  372 tcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
     ||| ||||||||  |||||  |||||||||||||||||||||| |||| ||||| || || || |||||||||    
T  3856948 gcaaagaggtctcagaaagaaaatttacctcctaattttatttagcacattattggcatgtaatgtttcatctc 3856875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 445
Target Start/End: Complemental strand, 24988921 - 24988812
Alignment:
Q  336 tcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 435  Q
    |||||||||||||||||| |||||||||||||||   ||| ||||||||| |||| |||| || |||||||||||||||| |||||||||| ||| ||||    
T  24988921 tcatttgatgatgttgatattattcgaacattcaccgcaaagaggtctcggaaagggcatgtatctcctaattttatttagcacactattgccagattat 24988822  T
Q  436 atttcatctc 445  Q
     |||||||||    
T  24988821 gtttcatctc 24988812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 43136509 - 43136598
Alignment:
Q  95 actgttcaacaaatcaaatgctaaaatattaattaatgctgatgagtaattgaatcacatttgttaaccatataggaaggaaatagatat 184  Q
    |||||||||||||  |||||||||||||||||||||||  |||||||||| | |||||||||||||   |||||||||||||||||||||    
T  43136509 actgttcaacaaactaaatgctaaaatattaattaatgtcgatgagtaatcggatcacatttgttattaatataggaaggaaatagatat 43136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 276 - 407
Target Start/End: Original strand, 15667973 - 15668111
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||| |       |||||||||||||||| |||||||||||||| |||||||||||| |    
T  15667973 caacaagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttgatattattcgaacatgc 15668072  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaat 407  Q
    |   ||| ||||| ||| |||  ||||||||||||||||    
T  15668073 acaacaaagaggtatcggaaaaggcatttacctcctaat 15668111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 22934910 - 22934798
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggt 432  Q
    |||||| |||||||||||||| ||||| |||||||||   ||| ||||||||| ||||  |||||||||| ||||||| ||||  |||||||||| |  |    
T  22934910 aagtcacttgatgatgttgatattattagaacattcaccgcaaagaggtctcggaaaggtcatttacctcttaattttgtttaagacactattgatatat 22934811  T
Q  433 tatatttcatctc 445  Q
    |||||||||||||    
T  22934810 tatatttcatctc 22934798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 51408666 - 51408609
Alignment:
Q  387 aaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    |||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  51408666 aaagggcatttacctcctaattttatttagcacgctattgacatgttatatttcatct 51408609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 425
Target Start/End: Original strand, 38282515 - 38282563
Alignment:
Q  377 gaggtctcgaaaagagcatttacctcctaattttatttaccacactatt 425  Q
    ||||||||| |||||||||||||||| |||||||||||| |||||||||    
T  38282515 gaggtctcggaaagagcatttacctcataattttatttagcacactatt 38282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 9743379 - 9743444
Alignment:
Q  380 gtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||||| | |||| ||||||||| |||||||||||| ||||||||||  ||||||| |||||||||    
T  9743379 gtctcggagagagtatttacctcgtaattttatttagcacactattggtaggttatgtttcatctc 9743444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 43585933 - 43585979
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggttatattt 439  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||||||    
T  43585933 catttacctcctaattttatttagcacgctattatcaggttatattt 43585979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 12539574 - 12539749
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgtta------caggagatattcaagtcatttgatgatgttgattttattcgaacattca 369  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||      ||  |||||||||||||| |||||||||||||| |||||||||||||||    
T  12539574 caacaagatcaacaatgcgtggttcaatgacttgatgatatgttaaccgagcataagatattcaagtcacttgatgatgttgatattattcgaacattca 12539673  T
Q  370 tttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
       ||| ||||||| | ||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  12539674 ccgcaaagaggtcttggaaagaacatttacctcctaattttatttagcacactattgacacgttatgtttcatctc 12539749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 275 - 442
Target Start/End: Complemental strand, 19952007 - 19951833
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| |||||||| | |||||||||||||| ||||||| |||        ||||||||||||||| |||||||||||||| |||||||||||||    
T  19952007 gcaacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcgaacatt 19951908  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 442  Q
    ||   ||| |||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  19951907 caccgcaaagaggtctcgaaaagggcatttaccttctaatttaatttagcacactattgacaggttatatttcat 19951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 445
Target Start/End: Complemental strand, 35649831 - 35649659
Alignment:
Q  280 aagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcattt 372  Q
    |||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||  |||||||| |     
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatattattgaaacattcactg 35649732  T
Q  373 caatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||| ||| ||||||||||  ||||||| |||||||||||||||  ||| | |||| |||||||||||||||||    
T  35649731 caaagagatctcgaaaaggacatttacttcctaattttatttagtacatttttgataggttatatttcatctc 35649659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 275 - 442
Target Start/End: Complemental strand, 33453364 - 33453190
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgtt-aca-------ggagatattcaagtcatttgatgatgttgattttattcgaacat 366  Q
    ||||||||||||||||||||| || ||||||||| || ||||||| |||       ||||||||| |||||| |||||||||||||| ||||||||||||    
T  33453364 gcaacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcgaacat 33453266  T
Q  367 tcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcat 442  Q
    |||   ||| ||||| ||  ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||    
T  33453265 tcaccgcaaagaggtatcagaaagagcatttacctcctaattttatttagcagactattggcaagttatatttcat 33453190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 276 - 435
Target Start/End: Complemental strand, 34317642 - 34317482
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttacag-------gagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||        ||||||||||||||| || ||||||||||| || |||      ||    
T  34317642 caacaagatcaatgatgtgtggttcaatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttgatattgttc------tc 34317549  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 435  Q
    |   ||| |||||||| |||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  34317548 accgcaaagaggtctcaaaaagagcatttacctcctaattttaattagcacactattggcaggttat 34317482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 22483548 - 22483725
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| |||  | ||| ||||||||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  22483548 gcaacaagattaacaatgaatggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 22483647  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||   ||| ||  ||||| |||| ||||||||||||||||||||| || ||| |||||  ||||| ||||| ||||||    
T  22483648 caccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatttgcaggtaatattccatctc 22483725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 22464669 - 22464847
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||| ||||||    
T  22464669 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacatt 22464768  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 445  Q
    ||   ||| ||  |||||||||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  22464769 caccgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatttgccaggtaatattccatctc 22464847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 34526351 - 34526529
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  34526351 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 34526450  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 445  Q
    ||   ||| ||  ||||| |||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  34526451 caccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatttggcaggtaatattccatctc 34526529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 31392486 - 31392554
Alignment:
Q  355 ttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta 423  Q
    ||||||||||||| |  |||| |||||||||||||| ||||||||||| |||||||||||| |||||||    
T  31392486 ttattcgaacatttacctcaaagaggtctcgaaaagggcatttacctcttaattttatttagcacacta 31392554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 445
Target Start/End: Complemental strand, 18426072 - 18425956
Alignment:
Q  333 aagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatt----taccacactattgac 428  Q
    |||||| ||||| |||||||| |||||||||||||||    || |||||||| ||||    ||||||||||||||||||||    || ||||||||||||    
T  18426072 aagtcacttgataatgttgatattattcgaacattcaccgtaaagaggtctcaaaaatgttatttacctcctaattttattaatttatcacactattgac 18425973  T
Q  429 aggttatatttcatctc 445  Q
    | |||||||||||||||    
T  18425972 aagttatatttcatctc 18425956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 13309707 - 13309765
Alignment:
Q  387 aaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||| ||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||    
T  13309707 aaagggcatttacctcataatattatttagcacactattgacagattatatttcatctc 13309765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 13308771 - 13308816
Alignment:
Q  324 gagatattcaagtcatttgatgatgttgattttattcgaacattca 369  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||    
T  13308771 gagatattcaagtcacttgatgatgttgatattattcgaacattca 13308816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 445
Target Start/End: Original strand, 34907640 - 34907758
Alignment:
Q  324 gagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta 423  Q
    |||||| ||| |||| |||||| ||||||| | |||| |||||||||   |  || || |||||||| ||||||||||||||||   |||||  ||||||    
T  34907640 gagatactcaggtcacttgatggtgttgatataattcaaacattcatcggagagaagtttcgaaaagggcatttacctcctaat---atttaagacacta 34907736  T
Q  424 ttgacaggttatatttcatctc 445  Q
    ||||| ||||||||||||||||    
T  34907737 ttgacgggttatatttcatctc 34907758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 7886706 - 7886661
Alignment:
Q  396 ttacctcctaattttatttaccacactattgacaggttatatttca 441  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||    
T  7886706 ttacctcctaattttatttagcacactattgatatgttatatttca 7886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 445
Target Start/End: Original strand, 31392927 - 31392972
Alignment:
Q  400 ctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |||||||||||||||| ||||||||||||||||||| || ||||||    
T  31392927 ctcctaattttatttagcacactattgacaggttatgttacatctc 31392972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 278
Target Start/End: Complemental strand, 35651605 - 35651564
Alignment:
Q  237 ttggttgatagaacaagtattgagaatatgaatgttgtgcaa 278  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  35651605 ttggttgatagaacaagtattcagaatgtgaatgttgtgcaa 35651564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 26656392 - 26656340
Alignment:
Q  393 catttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||||||||||||||||  |||||||||   |||||||||||||||||    
T  26656392 catttacctcctaattttatttcgcacactattagtaggttatatttcatctc 26656340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 1954951 - 1955005
Alignment:
Q  391 agcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||||||||| | ||||||||||||| |||  ||||||||| ||||||||||||||    
T  1954951 agcatttactttctaattttatttagcacgttattgacagattatatttcatctc 1955005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 433
Target Start/End: Original strand, 45121340 - 45121396
Alignment:
Q  377 gaggtctcg-aaaagagcatttacctcctaattttatttaccacactattgacaggtt 433  Q
    ||||||||| |||||| |||||||||||||||||||||||  ||||||||| ||||||    
T  45121340 gaggtctcggaaaaga-catttacctcctaattttatttagaacactattggcaggtt 45121396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 276 - 444
Target Start/End: Complemental strand, 12180700 - 12180525
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||  ||||| ||||||||||||||||||||||||||       ||||| |||||||||| |||||| ||||||| ||||||||||||||    
T  12180700 caacaagatcaacattgtgtggttcaatgacttgatgatatgttacaccgagtgggagaaattcaagtcacttgatgttgttgatattattcgaacattc 12180601  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
    |   ||| |||||||||  ||| |||||||||| ||||||||||||| |||| |||||||||||||| ||||||||    
T  12180600 accgcaaagaggtctcgggaagggcatttaccttctaattttatttagcacattattgacaggttatgtttcatct 12180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 445
Target Start/End: Original strand, 11970964 - 11971135
Alignment:
Q  280 aagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcattt 372  Q
    |||||||||||||||| ||||||||||||||| ||||||||||       | |||||||||||||| |||||||||||||| || | ||||||||||       
T  11970964 aagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattcaagtcacttgatgatgttgatattttgcgaacattcaccg 11971063  T
Q  373 caatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
     || ||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  11971064 aaa-gaggtctcagaaagggcatttacctcctaattttatttagcacactattgacaggttatgtttcatctc 11971135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 323 - 445
Target Start/End: Original strand, 3050917 - 3051041
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||||    || ||||||||| |||||||||||||| |||||||||||||| ||||||    
T  3050917 ggagatattcaagtcacttgatgatgttgatattattcaaacattcaccggaaagaggtctcggaaagagcatttaccacctaattttatttagcacact 3051016  T
Q  423 attgaca--ggttatatttcatctc 445  Q
    |||||||  ||||||||||||||||    
T  3051017 attgacacgggttatatttcatctc 3051041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 445
Target Start/End: Original strand, 25599159 - 25599331
Alignment:
Q  283 atcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattcattt--- 372  Q
    |||||||| |||  |||||||||||||||| |||||||||       ||||||| |||||||| |||||||||||||| ||||||||||||||||         
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcgaacattcatcatcg 25599258  T
Q  373 caatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||| ||||||||| |||| |||||||| ||||||||| ||||| |||||||||| || |||||||||||||||    
T  25599259 caaagaggtctcggaaagggcatttacgtcctaatttgatttaacacactattggcaagttatatttcatctc 25599331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 24074411 - 24074588
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||||       |||||||||||||| | |||||||||||||| |||||||||||||    
T  24074411 gcaacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcgaacatt 24074510  T
Q  368 c-atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    | |    || ||||||||| || || ||||||||||||||||||||||| |||  | ||||||| ||||||||||||||    
T  24074511 caaccggaaagaggtctcggaatga-catttacctcctaattttatttagcacgtttttgacagattatatttcatctc 24074588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 25340445 - 25340620
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||| |||||||  || | ||| ||||||||||||||||       | ||||||| |||||| |||||||||||||| ||||||||||||||    
T  25340445 caacaagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttgatattattcgaacattc 25340544  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |    || ||||||||  |||| |||||||||||||||||||| ||| |||||||||| ||| |||| |||||||||    
T  25340545 accataaagaggtctcagaaagtgcatttacctcctaatttta-ttaacacactattggcagattatgtttcatctc 25340620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 444
Target Start/End: Original strand, 1296563 - 1296684
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||||||| |||||||| || || |||||| || |||||    || ||||||||| ||||  |||||||||||| |||||||||||||||||    
T  1296563 ggagatattcaagtcacttgatgatattaatattattcaaatattcacaataaagaggtctcggaaaggccatttacctccttattttatttaccacact 1296662  T
Q  423 attgacaggttatatttcatct 444  Q
    || | |||||||||||||||||    
T  1296663 atcggcaggttatatttcatct 1296684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 421
Target Start/End: Original strand, 30621227 - 30621324
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacac 421  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||||| |  || ||||||||| ||||  ||||||||||||||||||||||| |||||    
T  30621227 ggagataatcaagtcacttgatgatgttgatattattcgaacattca-tcgaaagaggtctcggaaaggacatttacctcctaattttatttaacacac 30621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 445
Target Start/End: Complemental strand, 32442078 - 32441973
Alignment:
Q  340 ttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatattt 439  Q
    |||||||||||||| ||||||||||||||||  ||| ||||| ||| |||| ||||||||||| |||||||||||| ||||| |||| || ||||| |||    
T  32442078 ttgatgatgttgatattattcgaacattcatcccaaagaggtatcggaaagggcatttacctcttaattttatttagcacaccattggcaagttatgttt 32441979  T
Q  440 catctc 445  Q
     |||||    
T  32441978 tatctc 32441973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 22257738 - 22257696
Alignment:
Q  237 ttggttgatagaacaagtattgagaatatgaatgttgtgcaac 279  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  22257738 ttggttgatagaacaagtattgagaatgcgaatgttgtgcaac 22257696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 279
Target Start/End: Original strand, 24696100 - 24696135
Alignment:
Q  244 atagaacaagtattgagaatatgaatgttgtgcaac 279  Q
    |||||||||||||||||||| |||||||||||||||    
T  24696100 atagaacaagtattgagaatgtgaatgttgtgcaac 24696135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 259917 - 260094
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||       ||| |||||||||||| |||||||  ||||| |||||||||||||    
T  259917 gcaacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcgaacatt 260016  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    ||   ||| ||||||||| |||  ||||||||| |||||||||||||| ||| |||||||||| ||||||||||||||    
T  260017 caccgcaaagaggtctcggaaatggcatttaccacctaattttatttagcacgctattgacagattatatttcatctc 260094  T

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Target: scaffold0178 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 445
Target Start/End: Original strand, 17740 - 17916
Alignment:
Q  276 caacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacattc 368  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||       ||||||||| |||||| ||| |||||||||| ||||||||||||||    
T  17740 caacaagatcaacgatgtgtggttcaatgacttgatgatacgttacatcgagcgggagatatttaagtcacttgctgatgttgatattattcgaacattc 17839  T
Q  369 atttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatctc 445  Q
    |   ||| ||||||||  ||||  |||||| |||||||||||||||| |||||||||||||| |||  |||||||||    
T  17840 accgcaaagaggtctccgaaaggacatttaactcctaattttatttagcacactattgacagattacgtttcatctc 17916  T

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Target: scaffold0015 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 444
Target Start/End: Complemental strand, 214337 - 214161
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||||||| || ||| ||| ||||||||||||||||||||||       |||||||||| ||||| |||||||||||||| |||||||||||||    
T  214337 gcaacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcgaacatt 214238  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttatatttcatct 444  Q
     | |  || |||||| || |||| | |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  214237 aactcaaaagaggtcgcggaaagggaatttacctcctaattttatttagcacgctattggcaggttatatttcatct 214161  T

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Target: scaffold0198 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 323 - 445
Target Start/End: Original strand, 1450 - 1572
Alignment:
Q  323 ggagatattcaagtcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |||  |||||| ||||||||||||||||| || |||    
T  1450 ggagatattcaaatcacttgatgatgttgatattattcgaacattcattgcaaagaggtctcggaaatggcatttgcctcctaattttatttagcatact 1549  T
Q  423 attgacaggttatatttcatctc 445  Q
    || | || | ||| |||||||||    
T  1550 atcggcatgctatgtttcatctc 1572  T

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Target: scaffold0726 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 336 - 445
Target Start/End: Original strand, 950 - 1059
Alignment:
Q  336 tcatttgatgatgttgattttattcgaacattcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacactattgacaggttat 435  Q
    |||||||||||||||||| |||||||||||||||   ||| ||||||||  |||| ||||||| |||||||||||||||| |||||||||| ||| ||||    
T  950 tcatttgatgatgttgatattattcgaacattcaccgcaaagaggtctccgaaagggcatttatctcctaattttatttagcacactattgccagattat 1049  T
Q  436 atttcatctc 445  Q
     |||||||||    
T  1050 gtttcatctc 1059  T

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Target: scaffold0002 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 442
Target Start/End: Complemental strand, 435469 - 435350
Alignment:
Q  325 agatattcaagtcatttgatgatgttgattttattcgaacat--tcatttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacact 422  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||  | |   | | ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  435469 agatattcaagtcacttgattatgttgatattattagaacatattaaccgcgaagaggtctcgaaaaggacatttacctcctaattttatttagcacact 435370  T
Q  423 attgacaggttatatttcat 442  Q
    |||| ||| |||||||||||    
T  435369 attgtcagattatatttcat 435350  T

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Target: scaffold0168 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 15813 - 15991
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||||||||||    
T  15813 gcaacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcgaacatt 15912  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 445  Q
    ||   ||| ||  ||||| |||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  15913 caccgcaaagaaatctcggaaagggcatttacctcctaattttatctagcacgctatttgccaggtaatattccatctc 15991  T

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Target: scaffold0012 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 445
Target Start/End: Original strand, 197104 - 197282
Alignment:
Q  275 gcaacaagatcaacgatgtgtagttcaatgacttgatgatatgttaca-------ggagatattcaagtcatttgatgatgttgattttattcgaacatt 367  Q
    |||||||||| ||| ||| || ||| ||||| ||||||||||||||||       |||||||||||| ||| |||||||  ||||| |||||| ||||||    
T  197104 gcaacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcaaacatt 197203  T
Q  368 catttcaatgaggtctcgaaaagagcatttacctcctaattttatttaccacacta-ttgacaggttatatttcatctc 445  Q
    ||   ||| ||  |||||||||| ||||||||||||||||||||| || ||| ||| ||| ||||| ||||| ||||||    
T  197204 caccgcaaagaaatctcgaaaagggcatttacctcctaattttatctagcacgctatttgccaggtaatattccatctc 197282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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