View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_high_5 (Length: 441)
Name: NF14613_high_5
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 4142046 - 4142472
Alignment:
| Q |
1 |
caagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctcaaataagaaagacgctgaagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4142046 |
caagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctcaaataaaaaagacgctgaagcc |
4142145 |
T |
|
| Q |
101 |
aaattcaaagagatatccgaagcttatgaggtaacattacgttttctttaatctctgttactagttgtcgttctaactcatagaaattctaa-----ata |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
4142146 |
aaattcaaagagatatccgaagcttatgaggtaacattacgttttctttaatctctgttactagttgtcgttctaactcatagaaattctgatctgaata |
4142245 |
T |
|
| Q |
196 |
tgannnnnnngatgaaggttctaagtgatccacaaaagaaagcaatttatgatcaatatggagaagaaggacttaaagggcaagtaccaccacggcctca |
295 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4142246 |
tgatttatttgatgaaggttctaagtgatccacaaaagaaagcaatttatgatcaatatggagaagaaggacttaaagggcaagtaccaccac---ctca |
4142342 |
T |
|
| Q |
296 |
agatgctacattcttccaaagtggagatgggccaacaacgtttaggttcaatccaagaaacgcaaacgatatctttgcagagtttttcgggttttcaagt |
395 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4142343 |
agatgctacattcttccaaagtggagatgggccaacaacgtttaggttcaatccaagaaatgcaaacgatatctttgcagagtttttcgggttttcaagt |
4142442 |
T |
|
| Q |
396 |
ccgtttggaggaatgggagctggtgggaat |
425 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
4142443 |
ccgtttggaggaatgggagctggtgggaat |
4142472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4145646 - 4145778
Alignment:
| Q |
1 |
caagaatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctcaaataagaaagacgctgaagcc |
100 |
Q |
| |
|
||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| | |
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| T |
4145646 |
caagaatgccacagacgatgaattgaagaaagcatatagaaaacttgccatgaaatggcaccctgacaagaatcctgacaataagaatgatgctgagact |
4145745 |
T |
|
| Q |
101 |
aaattcaaagagatatccgaagcttatgaggta |
133 |
Q |
| |
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||||||||| ||||| ||||| ||||||||| |
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| T |
4145746 |
aaattcaaactcatatctgaagcatatgaggta |
4145778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 4146504 - 4146557
Alignment:
| Q |
207 |
atgaaggttctaagtgatccacaaaagaaagcaatttatgatcaatatggagaa |
260 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
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|
| T |
4146504 |
atgaaggttctaagtgatccgcaaaagagagcaatttatgatcagtatggagaa |
4146557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 38859240 - 38859351
Alignment:
| Q |
23 |
ttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctca-aataagaaagacgctgaagccaaattcaaagagatatccgaa |
121 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||| | || || ||||| |||||||||||||| || | || || ||| |
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|
| T |
38859240 |
ttgaagaaagcttacagaaaactcgccatgaagtggcatcctgataagaa-ccctaataacaaaaaagaagctgaagccaaatttaagcaaatctcagaa |
38859338 |
T |
|
| Q |
122 |
gcttatgaggtaa |
134 |
Q |
| |
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|||||||| |||| |
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|
| T |
38859339 |
gcttatgatgtaa |
38859351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 30479816 - 30479923
Alignment:
| Q |
26 |
aagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctcaaataagaaagacgctgaagccaaattcaaagagatatccgaagctt |
125 |
Q |
| |
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||||||||||| || ||||||||||||||||||||||||||||| ||||| | || || ||||| |||||||| || ||||| | || || ||||||| |
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| T |
30479816 |
aagaaagcttataggaaacttgccatgaaatggcaccctgataaaaatccaaccaacaaaaaagatgctgaagctaagttcaagcaaatttctgaagctt |
30479915 |
T |
|
| Q |
126 |
atgaggta |
133 |
Q |
| |
|
|||||||| |
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|
| T |
30479916 |
atgaggta |
30479923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 4800444 - 4800362
Alignment:
| Q |
26 |
aagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctca-aataagaaagacgctgaagccaaattcaa |
108 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||| ||||||||||| |||| | || |||||||| ||||||||||||||||| |
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| T |
4800444 |
aagaaagcttatcggaaacttgctatgaaatggcatcctgataagaa-ccctaataacaagaaagatgctgaagccaaattcaa |
4800362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 30480538 - 30480574
Alignment:
| Q |
229 |
aaaagaaagcaatttatgatcaatatggagaagaagg |
265 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||| |
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|
| T |
30480538 |
aaaagaaagcaatctatgatcaatatggggaagaagg |
30480574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 49917546 - 49917414
Alignment:
| Q |
5 |
aatgccacagaagaagagttgaagaaagcttacagaaaacttgccatgaaatggcaccctgataagaatccctca-aataagaaagacgctgaagccaaa |
103 |
Q |
| |
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||||| |||||||| || ||||||||||| || |||||| | || ||||||||||||||||| ||||| |||| | ||||| ||||| ||||||||| |
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| T |
49917546 |
aatgctacagaagatgatttgaagaaagcatatagaaaattggctatgaaatggcaccctgacaagaa-ccctaacaataaaaaagaagctgaagcccgt |
49917448 |
T |
|
| Q |
104 |
ttcaaagagatatccgaagcttatgaggtaacat |
137 |
Q |
| |
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|||||| |||| || || ||||||| |||||||| |
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| T |
49917447 |
ttcaaacagatctctgaggcttatgcggtaacat |
49917414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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