View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_high_6 (Length: 376)
Name: NF14613_high_6
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 177 - 343
Target Start/End: Original strand, 7101395 - 7101561
Alignment:
| Q |
177 |
aggacacatgtttcctccgatagaatgtattgacgcaattgttaatacatctctccactaatgaattatacaacctgagacggcaactttgttgtaacaa |
276 |
Q |
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| T |
7101395 |
aggacacatgtttcctccgatagaatgtattgacacaattgttaatacatctctcgtctaatgaattatacaacctgagacgacaactttgttgtaacaa |
7101494 |
T |
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| Q |
277 |
agaataaatcaacaaaatatatcttatgctactagatcaaataaaacttctgcattcatatcgttac |
343 |
Q |
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| T |
7101495 |
agaataaatcaacaaaatatatcttatgctactagatcaaataaaacttctgcattcatatcgttac |
7101561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 7101131 - 7101311
Alignment:
| Q |
15 |
aataaaatcatggcaatgttgatatatctatcagataaaaacgatcgaagcacatgaacatcaatacgaatttagagaagcaccattacaagacct---- |
110 |
Q |
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| T |
7101131 |
aataaaatcatggcaatgttgatatatctatcagataaaaacgatcgaagcacatgaacatcaatacgaatttagagaagcaccattacaagaccttttt |
7101230 |
T |
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| Q |
111 |
-------------ctttctttgaatcttctatttggatcctcaacataatgccagcttgcaatattgtttgtctgttgtag |
178 |
Q |
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| T |
7101231 |
cagcaacattccactttctttgaatcttctatttggatcctcaacataatgccagcttgcaatattgtttgtctgttgtag |
7101311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 191 - 332
Target Start/End: Original strand, 7146786 - 7146927
Alignment:
| Q |
191 |
ctccgatagaatgtattgacgcaattgttaatacatctctccactaatgaattatacaacctgagacggcaactttgttgtaacaaagaataaatcaaca |
290 |
Q |
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| T |
7146786 |
ctccgatagaatgaactgacgcaattgttaaaacatctctccactaatgaattatacaacctaagactgcaattttgttggaacaaagaataaatcaaca |
7146885 |
T |
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| Q |
291 |
aaatatatcttatgctactagatcaaataaaacttctgcatt |
332 |
Q |
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| T |
7146886 |
aaatatatcttatgctactagatcaaataaaacttctgcatt |
7146927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 191 - 294
Target Start/End: Original strand, 7115326 - 7115429
Alignment:
| Q |
191 |
ctccgatagaatgtattgacgcaattgttaatacatctctccactaatgaattatacaacctgagacggcaactttgttgtaacaaagaataaatcaaca |
290 |
Q |
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| T |
7115326 |
ctccgatagaatgttttgacacaattgttaaaacatctctccactagtgaattatacaatccaagactacaattttgttggaacagagaataaatcaaca |
7115425 |
T |
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| Q |
291 |
aaat |
294 |
Q |
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|||| |
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| T |
7115426 |
aaat |
7115429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 7115161 - 7115223
Alignment:
| Q |
116 |
tttgaatcttctatttggatcctcaacataatgccagcttgcaatattgtttgtctgttgtag |
178 |
Q |
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| T |
7115161 |
tttgaatcttatatttggatcctgaacgtaatgccaacttccaatattgtttgtctgttgtag |
7115223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 7146194 - 7146271
Alignment:
| Q |
33 |
ttgatatatctatcagataaaaacgatcgaagcacatgaacatcaatacgaatttagagaagcaccattacaagacct |
110 |
Q |
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| T |
7146194 |
ttgatatatcaaccagataaaaaagattcagacacatgaacatcaataagaatttagagaagcaccagtacaagacct |
7146271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 7114797 - 7114869
Alignment:
| Q |
15 |
aataaaatcatggcaatgttgatatatctatcagataaaaacgatcgaagcacatgaacatcaatacgaattt |
87 |
Q |
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| T |
7114797 |
aataaaatcagggcaatgctgatatatctatcagataaatatgattgaagaacatgtacatcaataagaattt |
7114869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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