View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_high_8 (Length: 285)
Name: NF14613_high_8
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 28312935 - 28312665
Alignment:
| Q |
1 |
aatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaatggcatcaccttggtag |
100 |
Q |
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| T |
28312935 |
aatataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagattcaacggcatcaccttggtag |
28312836 |
T |
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| Q |
101 |
gtgatgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaa |
200 |
Q |
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| T |
28312835 |
gtgatgatgtcgtttctatatggaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaa |
28312736 |
T |
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| Q |
201 |
caggttttgtattgtacagaggcattgctctctataaatctgttagatatggtgaaagctgaagtttcaat |
271 |
Q |
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| T |
28312735 |
caggttttgtattgtacagaggcattgctctctataaatctgttagatatggtgaaagctgaagtttcaat |
28312665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 4 - 248
Target Start/End: Complemental strand, 28316069 - 28315825
Alignment:
| Q |
4 |
ataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaatggcatcaccttggtaggtg |
103 |
Q |
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| T |
28316069 |
ataagaggctctgccaacactaaatggcttgtttatgccgttttctactttagtaagttgaatggtaccatttgatgcaatggcatcaccttggtaggtg |
28315970 |
T |
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| Q |
104 |
atgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaacag |
203 |
Q |
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| T |
28315969 |
atgatttcgtttctatatggaccaaaaaaattcgagaattcaaaagataaattccaattatgatggagcatgaggagtggaagaaggattaagaaaacgg |
28315870 |
T |
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| Q |
204 |
gttttgtattgtacagaggcattgctctctataaatctgttagat |
248 |
Q |
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| T |
28315869 |
gttttgtattgtatagaggcatggctatctataaatttgttagat |
28315825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 28320376 - 28320134
Alignment:
| Q |
4 |
ataagaggctctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagatgcaatggcatcaccttggtaggtg |
103 |
Q |
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| T |
28320376 |
ataagaggctctgccaacactatatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaacggcatcaccttcgtagttg |
28320277 |
T |
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| Q |
104 |
atgatgtcgtttctatatgtaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaacag |
203 |
Q |
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| T |
28320276 |
atgatgtcgtttatatatggaccgtaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtggaagaaggattaagaaaacgg |
28320177 |
T |
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| Q |
204 |
gttttgtattgtacagaggcattgctctctataaatctgttag |
246 |
Q |
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| T |
28320176 |
gttttgtattgtatagaggcatggctttctacaaatttgttag |
28320134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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