View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_low_1 (Length: 591)
Name: NF14613_low_1
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 24259551 - 24259904
Alignment:
| Q |
1 |
tctgtggagaagcacaaggttgtgtttgttaaattgtttcctgaaatatccaatgttacaagagataatcctccaattgcttcttttatcatgcgtgtcg |
100 |
Q |
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| T |
24259551 |
tctgtggagaagcacaaggttgtgtttgttaaattgtttcctgaaatatccaatgttacaagagataatcctccaattgcttcttttatcatgcgtgtcg |
24259650 |
T |
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| Q |
101 |
ttagttctgctcatggaaatcgaaaagctctcacacatccaggtaatcaaaattctt---------atttttgttatttcaatttttcttgtggatagag |
191 |
Q |
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| T |
24259651 |
ttagttctgctcatggaaatcgaaaagctctcacacatccaggtaatcaaaattcttatttttgcaatttttgttacttcaatttttcttgtggatagag |
24259750 |
T |
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| Q |
192 |
aactatcagatttaatttgtatacactgtcagtttaaaaatgttttacacaaattccaattataat--ttgtat-------aaaatgtttgacgtttatc |
282 |
Q |
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| T |
24259751 |
aactatcagatttaatttgtatacactgtcagtttaaaaatgttttacacaa---tcaattataatagttagatcgttggaaacgtgtttgacgtttatc |
24259847 |
T |
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| Q |
283 |
atattcacttctaatgtcatacgcatgattggttgtgatgggctgactaatgcatggaaaattggaa |
349 |
Q |
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| T |
24259848 |
a----------taatgtcataggcatgattggttgtgatgggctgactaatgcatggaaaattggaa |
24259904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 349 - 574
Target Start/End: Original strand, 24259931 - 24260157
Alignment:
| Q |
349 |
attttctaacatgtagttttttatgttgtaggttgcaatttttactgttttctcaataatgttttgctgttgagttcattatattttttcaacagtttct |
448 |
Q |
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| T |
24259931 |
attttctaacatgtagttttttatgttgtaggttgcaatttttactgttttctcaataatgttttgctgttgagttcattatattttttcaacagtttct |
24260030 |
T |
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| Q |
449 |
tgtgttgattaattt-ttgttttgatatgttacagagataaaagacaaagtgatcaagagcaatgaagattttgtttggtcaattgaggttccactgtct |
547 |
Q |
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| T |
24260031 |
tgtgttgattaatttcttgttttgatatgatacagagataaaagacaaagtgatcaagagcaatgaagattttgtttggtcaattgaggttccactgtct |
24260130 |
T |
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| Q |
548 |
ggaaaattcatcattgatgttgatttc |
574 |
Q |
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| T |
24260131 |
ggaaaattcatcattgatgttgatttc |
24260157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 21570849 - 21570913
Alignment:
| Q |
265 |
aaatgtttgacgtttatcatattcacttctaatgtcatacgcatgattggttgtgatgggctgac |
329 |
Q |
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| T |
21570849 |
aaatgtttgacttttatcatgacgacttctaaagtcacacacatgattggttgtgatgtgctgac |
21570913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 1018647 - 1018607
Alignment:
| Q |
202 |
tttaatttgtatacactgtcagtttaaaaatgttttacaca |
242 |
Q |
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| T |
1018647 |
tttaatttatatacactgtcagtgtacaaatgttttacaca |
1018607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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