View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14613_low_6 (Length: 423)
Name: NF14613_low_6
Description: NF14613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14613_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 12666689 - 12667074
Alignment:
| Q |
18 |
gaattcggcggtggtgaaatggatttgtgttgtggtgtttctttgtattttcaaaaataaataaatatggtatctatgtattgtgttgtttcgttggatt |
117 |
Q |
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| T |
12666689 |
gaattcggcggtggtgaaatggatatgtgttgtgttgtttctttgtattttcaaaaaaaaa---atatggtatctatgtattgtgttgtttcgttggatt |
12666785 |
T |
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| Q |
118 |
tgtatgttgtgttgagagaagaataatgaaggaattctaagnnnnnnnnttaatgctttttgggggagaatattacagtttggtttaattatagttgttg |
217 |
Q |
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| T |
12666786 |
tgtatgttgtgttgagagaagaataatgaaggaattctcaggaaaaaaattaatgctttttgggggagaatattacagtttggtttaattagagttgttg |
12666885 |
T |
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| Q |
218 |
ttgcttttgtgtttctgggttttatgaattcatgaatttatgaatttctttttctgtgatggtggtgcagtgatgaatttatgatggtggtgtgtgatga |
317 |
Q |
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| T |
12666886 |
ttggttttgtgtttctgggttttatgaattcatgaatttatgaatttctttttctgtgatggtggtgtagtgatgaatttatgatggtggtgtgtgatga |
12666985 |
T |
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| Q |
318 |
tttatgaatttctagatacagagtaattaattgggggatttatggattttgggagaagaagatatgaagattttattttgggagagaag |
406 |
Q |
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| T |
12666986 |
tttatgaatttctagatatagagtaattaattgggggatttatggattttgggagaagaagatatgaagattttattttgggagagaag |
12667074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 52077586 - 52077670
Alignment:
| Q |
233 |
tgggttttatgaattcatgaatttatgaatttctttttctgtgatggtggtgcagtgatgaatttatgatggtggtgtgtgatga |
317 |
Q |
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| T |
52077586 |
tgggttttatgagttcatgaatttatgaatttctttttcagtgatggtggtgtagggatgaatttatgatggtggtgtgtgatga |
52077670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 3616319 - 3616398
Alignment:
| Q |
236 |
gttttatgaattcatgaatttatgaatttctttttctgtgatggtggtgcagtgatgaatttatgatggtggtgtgtgatga |
317 |
Q |
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| T |
3616319 |
gttttatgaattcatgaatttatgaat--ctttttcagtgatggtggtgtatggatgaatttatgatggcggtgtctgatga |
3616398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 667625 - 667350
Alignment:
| Q |
18 |
gaattcggcggtggtgaaatggatttgtgttgtggtgtttctttgtattttcaaaaataaataaatatggtatctatgtattgtgttgtttcgttggatt |
117 |
Q |
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| T |
667625 |
gaattcggcgatggtgaaatggatatgtgttgtgttgtttctttgtattttaaaaaaaaaat------ggtatctatgtattgtgttgtttcgttggatt |
667532 |
T |
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| Q |
118 |
tgtatgttgtgttgagagaagaataatgaaggaattctaagnnnnnnnnttaatgctttttgggggagaatattacagtttggtttaattatagttgttg |
217 |
Q |
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| T |
667531 |
tgtatgttgcgttgagagaagaataatgaaggaattctgaggaaaaaaattaatgctttttgggggagaatattacagtttggtttaattagagttgttg |
667432 |
T |
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| Q |
218 |
ttgcttttgtgtttctgggttttatgaattcatgaatttatgaatttctttttctgtgatggtggtgcagtgatgaatttat |
299 |
Q |
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| T |
667431 |
ttggttttgtgtttctgggttttatgaattcataaatttatgaatttctttttctgtgatggtggtgcagtgatgaatttat |
667350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 294 - 406
Target Start/End: Complemental strand, 667154 - 667042
Alignment:
| Q |
294 |
atttatgatggtggtgtgtgatgatttatgaatttctagatacagagtaattaattgggggatttatggattttgggagaagaagatatgaagattttat |
393 |
Q |
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| T |
667154 |
atttatgatggtggtgtgtgataatttatgaatttctagatatagagtaattaattgggggatttatggattttgggaaaagaagatatgaagattttat |
667055 |
T |
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| Q |
394 |
tttgggagagaag |
406 |
Q |
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| T |
667054 |
tttgggagagaag |
667042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 16756516 - 16756477
Alignment:
| Q |
290 |
atgaatttatgatggtggtgtgtgatg-atttatgaattt |
328 |
Q |
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| T |
16756516 |
atgaatttatgatggtggtgtgtgatgaatttatgaattt |
16756477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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