View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_1 (Length: 603)
Name: NF14614_high_1
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 224 - 394
Target Start/End: Complemental strand, 14755603 - 14755433
Alignment:
| Q |
224 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
323 |
Q |
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| T |
14755603 |
gtcttatggttttttatatacgttgaaaatgaaaaactagttcatatatttgatgtggtttggtattttgtttaggagggaatcaataaagagtttgagg |
14755504 |
T |
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| Q |
324 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
394 |
Q |
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| T |
14755503 |
aaaagaaaactgaacttcaaacaaaagtacttgcggtatatgaagcatcttcaactgaaatcaaggtaaga |
14755433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 14755799 - 14755623
Alignment:
| Q |
13 |
cacagagaaaaacacagaagaagaaaaa--catttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttgagaag |
110 |
Q |
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| T |
14755799 |
cacagagaaaaacacagaagaaaaaaaaaacatttggaagcaaaagatgggttactggacaacaaaggttcttcccaagatcaagaaggtttttgagaag |
14755700 |
T |
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| Q |
111 |
aatagtactaagaaaacagctgctgctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
187 |
Q |
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| T |
14755699 |
aatagtactaagaaaacagctgctgctgaggtttccaagacctttgatgagtcaaaggtttgttttcttaaatttta |
14755623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 454 - 586
Target Start/End: Complemental strand, 14755370 - 14755246
Alignment:
| Q |
454 |
tcatgtattccctccgtaacaaaatatttaagcaaaaaagtatatgtatttggtccaaatttatatcagattcatttagactagatacatgtatctggtt |
553 |
Q |
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| T |
14755370 |
tcatgtattccctccgtaacaaaatatataagcaaaaaagtatatatatttggtctaaatttagatcagattcatttagac--------ggtatctggtt |
14755279 |
T |
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| Q |
554 |
aaaatttgggccacatacatgagatttttattt |
586 |
Q |
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| T |
14755278 |
aaaatttgggccacatacatgagatttttattt |
14755246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 516
Target Start/End: Complemental strand, 30102689 - 30102639
Alignment:
| Q |
464 |
cctccgtaacaaaatatttaagcaaaaaagtatatgtatttggtccaaattta |
516 |
Q |
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| T |
30102689 |
cctctgtaacaaaatat--aggcaaaaaagtatatgtatctggtccaaattta |
30102639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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