View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14614_high_11 (Length: 492)
Name: NF14614_high_11
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 6700266 - 6699815
Alignment:
| Q |
17 |
attaacaccaactctaaataagaattacatagaatacaacactttaaagtcatatcagtgagcacgatctcaagtgcaagtttcatatatagcttttata |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6700266 |
attaacatcaactctaaataagaattacatagaatacaccactataaagtcatatca---------------agtgcaagtttcatatatagcttttata |
6700182 |
T |
|
| Q |
117 |
taatcccaatccacttccattcataaataagatttttgtacacattatatctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagt |
216 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6700181 |
taatccaaatccactttcattcataaataagatgtttgt-cacattatatctctttgaatggagcaagttgaagttaattccttcaaaagagaggtaagt |
6700083 |
T |
|
| Q |
217 |
tataccacatgtacatattgcttacagtttattttctgtcataatatttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttca |
316 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
6700082 |
tataccacatgtacatattgcttacactttatattctgttataatattgggatgactgatatttatcaatgcaaattaggtgcataattgcaagccttca |
6699983 |
T |
|
| Q |
317 |
ttcattctaatctaaaa-cagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgcta |
415 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
6699982 |
ttcattctaatctaaaaccagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaacaaagtatgcta |
6699883 |
T |
|
| Q |
416 |
cataaattcactaataaattggtgttgaataggacatttgagtaactaaatcctccaccaattcatct |
483 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6699882 |
cataaattcactaataaattggtgctgaataggacatttgagtaactaaatcctccaccaattcatct |
6699815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 123 - 483
Target Start/End: Original strand, 20913771 - 20914132
Alignment:
| Q |
123 |
caatccacttccattcataaataagatttttgtacacattatatctctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttatacc |
222 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
20913771 |
caatccacttccattcataaataaggtttttgtacacattatatctctttgaatggagcaagttgaagttaattccttcaaaagagaggtaagttttacg |
20913870 |
T |
|
| Q |
223 |
acatgtacatattgcttacagtttattttctgtcataatatttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcatt |
322 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20913871 |
acatgtacatattgcttacactttatcttctgtcatcatattgggatgactgatatttatcaatgcaaattaggtgcataattgtaatccttcgttcatt |
20913970 |
T |
|
| Q |
323 |
ctaatctaaaa-cagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaa |
421 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20913971 |
ctaatataaaaccagtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaacgaagtatgctacataaa |
20914070 |
T |
|
| Q |
422 |
ttcactaataaattggtgttgaataggacatttgagtaactaaatcctccaccaattcatct |
483 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20914071 |
ttcactaataaattggtgctgaataggacatttgagtaactaaatcctccaccaattcatct |
20914132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 20913701 - 20913773
Alignment:
| Q |
17 |
attaacaccaactctaaataagaattacatagaatacaacactttaaagtcatatcagtgagcacgatctcaa |
89 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
20913701 |
attaacatcaactctaaataagaattatatagagtacaccactttaaagtcatatcagtgagcactatctcaa |
20913773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 456
Target Start/End: Original strand, 21137695 - 21137756
Alignment:
| Q |
395 |
acatcgaaataaagtatgctacataaattcactaataaattggtgttgaataggacatttga |
456 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
21137695 |
acatcgaaacaaagtatgctacataaattcattaataaattggaactgaataagacatttga |
21137756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 56 - 327
Target Start/End: Complemental strand, 25534105 - 25533843
Alignment:
| Q |
56 |
cactttaaagtcatatcagtgagcacgatctcaagtgcaagtttcatatatagcttttatataatcccaatccacttccattcataaataagatttttgt |
155 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25534105 |
cactttaaagtcatatcagtgggcactatctcaagtgcaagtttcatatacaacttttatataatcccaatccacttccattcataaataa--------- |
25534015 |
T |
|
| Q |
156 |
acacattatatc-tctttgaatggagcaagttgaatttaattccttcaaaagagaggtaagttataccacatgtacatattgcttacagtttattttctg |
254 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||| || | ||||||| | ||| ||||| |
|
|
| T |
25534014 |
-cacattatatcctctttgaatggagcaagttgaagttaattccttccaaagagaggtaaattataccacgtgttcagaatgcttaccctctatcttctg |
25533916 |
T |
|
| Q |
255 |
tcataatatttggataactgatatttatcaatgcaaattaggtgcataattgtaatccttcattcattctaat |
327 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
25533915 |
tcataatattgggatgactgatatttaccaatgcaaattaagcccataattgcaatccttcattcattctaat |
25533843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 25533091 - 25532990
Alignment:
| Q |
337 |
tagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaatatacatcgaaataaagtatgctacataaattcactaataaattg |
436 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
25533091 |
tagaaagatttgaagtttaattttgtttatcatttgtcaaggacactataccaaagatacatcgaaacaaagtatgctacataaattcactaataaaatg |
25532992 |
T |
|
| Q |
437 |
gt |
438 |
Q |
| |
|
|| |
|
|
| T |
25532991 |
gt |
25532990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 293 - 437
Target Start/End: Complemental strand, 2303878 - 2303734
Alignment:
| Q |
293 |
taggtgcataattgtaatccttcattcattctaatctaaaac-agtagaaagatttagagttgaattttgtttatcatttgtcaaggacactataccaaa |
391 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||||| ||||| ||| ||||||||| |
|
|
| T |
2303878 |
taggtgcataattgcaatccttcattcattctaatctaaaaccagca-aaagatttagagtcgaattctgtttatcatttttcaagtacattataccaaa |
2303780 |
T |
|
| Q |
392 |
tatacatcgaaataaagtatgctacataaattcactaataaattgg |
437 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2303779 |
tatacatcgaaacaaagtatgctacataaattcactaataaattgg |
2303734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University