View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_14 (Length: 466)
Name: NF14614_high_14
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_14 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 450
Target Start/End: Complemental strand, 24567 - 24144
Alignment:
| Q |
12 |
gagatgaagcaaacacgctgaagaaaccaatctaatgagaagcgatgtaaaataattcttcacatccaagtttgannnnnnnatccaggctttggtacca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24567 |
gagatgaagcaaacacgctgaagaaaccaatctaatgagaagcgatgtaaaataattcttcacatccaagtttgatttttttatccaggctttggta--- |
24471 |
T |
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| Q |
112 |
ttttgatcatgaaataactcatgcaggatattt-gcaatgaaatcaaggacaggtttcatgtctgactgttcaacaggcacaaagctcaactttgaaaga |
210 |
Q |
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| T |
24470 |
-------------ataactcatgcaggatgttttgcaatgaaatcaaggacaggttttatgtctgactgtacaacaggcacaaagctcaactttgaaaga |
24384 |
T |
|
| Q |
211 |
gaattttcatcctggcaaattagccattcagtgaaagatgactttgttacgtaaatgaaacctttccggtagccgttcaaatgtgatacatacagcagca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24383 |
gaattttcatcctggcaaattagccattcagtgaaagatgactttgttacgtaaatgaaacctttccggtagccgttcaaatgtgatacatacagcagca |
24284 |
T |
|
| Q |
311 |
gccgctcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcacccgataagtataatccaatgctttgaaaagcctatg |
410 |
Q |
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| T |
24283 |
gccgctcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcacccgataagtataatccaatgctttgaaaagcctatg |
24184 |
T |
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| Q |
411 |
agtgcgatcaacctcaaaagtcacttcatttgctgaattt |
450 |
Q |
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| T |
24183 |
agtgcgatcaacctcaaaagtcacttcatttgctgaattt |
24144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 1219141 - 1219248
Alignment:
| Q |
49 |
agaagcgatgtaaaataattcttcacatccaagtttgannnnnnnatccaggctttggtaccattttgatcatgaaataactcatgcaggatatttgcaa |
148 |
Q |
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| T |
1219141 |
agaagcgatggaaaataattcttcacatcctagtttgattttttaatccaggttttggtaccattttgatcataaacaaactcacggaggatattggcga |
1219240 |
T |
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| Q |
149 |
tgaaatca |
156 |
Q |
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| T |
1219241 |
taaaatca |
1219248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 1219373 - 1219445
Alignment:
| Q |
302 |
acagcagcagccgctcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcac |
374 |
Q |
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| T |
1219373 |
acagcagtagccattcaacaagatacataaagcaatcgggagatatatagtcaacttcctttatccaattcac |
1219445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 1219276 - 1219340
Alignment:
| Q |
193 |
aagctcaactttgaaagagaattttcatcctggcaaattagccattcagtgaaagatgactttgt |
257 |
Q |
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| T |
1219276 |
aagctaaaatttgaaagggaatttgcatcctggcaaataagccactcgatgaaagatgattttgt |
1219340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 28403952 - 28403880
Alignment:
| Q |
302 |
acagcagcagccgctcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcac |
374 |
Q |
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| T |
28403952 |
acagcagtagctgttcaacaagatacataaagcaactgggagatatatagtcaacatcctttatccaattcac |
28403880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 28404022 - 28403988
Alignment:
| Q |
223 |
tggcaaattagccattcagtgaaagatgactttgt |
257 |
Q |
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| T |
28404022 |
tggcaaataagccattcagtgaaagatgactttgt |
28403988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 34601761 - 34601850
Alignment:
| Q |
316 |
tcaataagatacataaagcagctgggagacatatagtcaacttcattcatccaattcacccgataagtataatccaatgctttgaaaagc |
405 |
Q |
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| T |
34601761 |
tcaaaaagatacataaagcaactgggagatatgtagtcaacttcctttatccgattcacactccaagtataacacaatgctttgtaaagc |
34601850 |
T |
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