View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14614_high_17 (Length: 456)
Name: NF14614_high_17
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 3 - 440
Target Start/End: Complemental strand, 33709595 - 33709157
Alignment:
| Q |
3 |
aatattttcctaatttaattaaatcaacgcaattaaatcaattggtgacaatgagagaagaattagcaaataataattaatattagaacaaggtaggaac |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33709595 |
aatattttccttatttaattaaatcaaagcaattaaatcaattggtgacaatgagagaagaattagcaaataataattaatattagaacaaggtaggaac |
33709496 |
T |
|
| Q |
103 |
gaaaggaatgaaattcttacgcgaaagacgaatctatcaagcatgaacctagcggccaaactaccaaaagcgaagtagatcgcgacggagaaatgagaag |
202 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33709495 |
gaaaggaaggaaattcttacgcgaaagacgaatctatcaagaatgaacctagcggccaaactaccaaaagcgaagtagatcgcgacggagaaatgagaag |
33709396 |
T |
|
| Q |
203 |
cgtctggaaccacattgtcgttccctctccagattaaatccatggcagacattgagcgagcgagcgagctataaatatttcagaatcaagaacagcggcg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33709395 |
cgtctggaaccacattgtcgttccctctccagattaaatccatggcagacattgagcgagcgagcgagctataaatatttcagaatcaagaacagcggcg |
33709296 |
T |
|
| Q |
303 |
ctaagatcatgccacggaatgcaatggaatgaatctccggtgcggcggtggaatgagatgataaccagatctggtggtggtttatacctaatttggg-ga |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33709295 |
ctaagatcatgccacggaatgcaatggaatgaatctccggtgcggcggtggaatgagatgataaccagatctggtggtggtttatacctaatttgggaga |
33709196 |
T |
|
| Q |
402 |
agcgtgcgtgcgtggttttggagttttggaagcaaaaat |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33709195 |
agcgtgcgtgcgtggttttggagttttggaagcaaaaat |
33709157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University