View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_high_2 (Length: 598)

Name: NF14614_high_2
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_high_2
NF14614_high_2
[»] chr1 (10 HSPs)
chr1 (18-597)||(33160339-33160937)
chr1 (306-490)||(29658752-29658936)
chr1 (306-490)||(29718779-29718963)
chr1 (376-596)||(30827305-30827527)
chr1 (522-596)||(29658623-29658697)
chr1 (522-596)||(29691138-29691212)
chr1 (522-596)||(29718650-29718724)
chr1 (369-490)||(29691267-29691388)
chr1 (177-301)||(29659189-29659323)
chr1 (247-301)||(29719216-29719270)
[»] chr6 (17 HSPs)
chr6 (381-490)||(6594396-6594505)
chr6 (534-597)||(6602874-6602937)
chr6 (154-220)||(6426279-6426345)
chr6 (535-597)||(6594272-6594334)
chr6 (527-597)||(7993851-7993921)
chr6 (153-252)||(7442584-7442677)
chr6 (154-257)||(6394611-6394710)
chr6 (528-597)||(6426854-6426923)
chr6 (164-212)||(6589617-6589665)
chr6 (160-220)||(6597184-6597244)
chr6 (157-212)||(14820443-14820498)
chr6 (523-597)||(7131973-7132047)
chr6 (382-488)||(7993974-7994080)
chr6 (547-595)||(6423597-6423645)
chr6 (157-212)||(14818165-14818220)
chr6 (170-220)||(6594884-6594934)
chr6 (534-595)||(10579426-10579487)
[»] chr7 (4 HSPs)
chr7 (154-257)||(15092404-15092503)
chr7 (153-220)||(10170311-10170378)
chr7 (153-220)||(10177836-10177903)
chr7 (529-597)||(15091820-15091888)
[»] chr5 (1 HSPs)
chr5 (523-597)||(20477751-20477825)
[»] chr8 (1 HSPs)
chr8 (522-593)||(17627729-17627800)
[»] chr4 (5 HSPs)
chr4 (529-572)||(10634128-10634171)
chr4 (534-584)||(53761467-53761517)
chr4 (376-512)||(10634202-10634338)
chr4 (522-563)||(3438352-3438393)
chr4 (534-587)||(21834063-21834116)
[»] chr3 (1 HSPs)
chr3 (537-584)||(514407-514454)


Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 597
Target Start/End: Original strand, 33160339 - 33160937
Alignment:
Q  18 aaaggcgaactaaacagttgagaattgttttatgaatcagttctaacaataagattagcagtcatttcaagaacagatgccaagttacgtacacttaaaa 117  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160339 aaaggcgaactaaacagttaagaattgttttatgtatcagttctaacaataagattagcagtcatttcaagaacagatgccaagttacgtacacttaaaa 33160438  T
Q  118 agaaaaagcagtaacttccagatgagtaaatgcacttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagtt 217  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160439 agaaaaagcggtagcttccggatgagtaaatgcacttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagtt 33160538  T
Q  218 caatgaaacttgagcatagtactttcataatactagcaaacaaaacatccatgacgatgc-----aagaagactttcttctttctgtcagtataagttca 312  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||||||||||    
T  33160539 caatgaaacttgagcatagcactttcataatactagcaaacaaaacatccatgacgatgcaatgcaagaagactttcttctttctgtcactataagttca 33160638  T
Q  313 aatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctccaaattggggaacat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160639 aatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctccaaattggggaacat 33160738  T
Q  413 gaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttacttcaaagtccgtcaaagaatta 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33160739 gaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttacttcaaagtccgtcaaagaatta 33160838  T
Q  513 tcatgctct--------------aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    |||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33160839 tcatgctctatactctctttcccaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaatgctgattctgtg 33160937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 306 - 490
Target Start/End: Complemental strand, 29658936 - 29658752
Alignment:
Q  306 aagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctccaaattgg 405  Q
    |||||||||| ||||||||||||||||||| ||||||| |||  |||| |||||| ||||| ||||||| ||||||||||||||||||| ||||| ||||    
T  29658936 aagttcaaatgcttaatcttactacaacattttaaaacttgagaaatagtttcttcagatacgtccttccaatagctcaaatcaagcacttccaagttgg 29658837  T
Q  406 ggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttac 490  Q
    |||| ||| ||| |||||||| |||||||| |||||||||||  ||||||   |||||| |||||||||||| ||  ||||||||    
T  29658836 ggaaaatggaagcaaacaatatgatgttttgatctctcaagtattgacagcgagccaaacaaagagactttactttcgggcttac 29658752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 306 - 490
Target Start/End: Complemental strand, 29718963 - 29718779
Alignment:
Q  306 aagttcaaatacttaatcttactacaacatcttaaaacatgacgaataatttctttagatatgtccttcgaatagctcaaatcaagcacctccaaattgg 405  Q
    |||||||||| |||||||||| |||||||||||||||| | |  || | |||||| ||| |  |||||| ||||||||||||||||||||||||| ||||    
T  29718963 aagttcaaatgcttaatcttagtacaacatcttaaaactttagaaacagtttcttcagacacttccttccaatagctcaaatcaagcacctccaagttgg 29718864  T
Q  406 ggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattgagggcttac 490  Q
    |||| ||| ||| ||||||||  ||||||| |||||||||||  ||||||   |||||| |||||||||||| ||  ||||||||    
T  29718863 ggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaagagactttactttcgggcttac 29718779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 376 - 596
Target Start/End: Original strand, 30827305 - 30827527
Alignment:
Q  376 aatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactt 475  Q
    |||||||||||||||||||||||||||||||||| ||  ||| |||||||| ||||||||||||||||||||  | |||| | |||||||||||||||||    
T  30827305 aatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaagtattaacagccagccaaagaaagagactt 30827404  T
Q  476 taattgagggcttact-tcaaagtccgtcaaagaattatcatgct--ctaatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaac 572  Q
    |||||  |||||  || | | ||   |  |||||| ||||||  |  | ||||||||||    |||||||||||||| ||||||||||||| ||||||||    
T  30827405 taatttggggctgcctatgacag-aagcaaaagaaatatcatctttcccaatagttgtgtgaaccattttgatgtcagtaagtgaaggacaatttgtaac 30827503  T
Q  573 aagtgaaaacaaagctgattctgt 596  Q
     || ||||||||||||||||||||    
T  30827504 gagcgaaaacaaagctgattctgt 30827527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 596
Target Start/End: Complemental strand, 29658697 - 29658623
Alignment:
Q  522 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgt 596  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  29658697 aatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29658623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 596
Target Start/End: Complemental strand, 29691212 - 29691138
Alignment:
Q  522 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgt 596  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  29691212 aatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29691138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 596
Target Start/End: Complemental strand, 29718724 - 29718650
Alignment:
Q  522 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgt 596  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  29718724 aatagttgtgtattccattttgatgtcactaagtgaaggacaatttataacgagcgaaaacaaagctgattctgt 29718650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 369 - 490
Target Start/End: Complemental strand, 29691388 - 29691267
Alignment:
Q  369 tccttcgaatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaa 468  Q
    |||||| ||||||||||||||||||||||||| |||||||| ||| ||| ||||||||  ||||||| |||||||||||  ||||||   |||||| |||    
T  29691388 tccttccaatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaagtattgacagcgagccaaacaaa 29691289  T
Q  469 gagactttaattgagggcttac 490  Q
    ||||||||| ||  ||||||||    
T  29691288 gagactttactttcgggcttac 29691267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 29659323 - 29659189
Alignment:
Q  177 tcagagaagtaaatcttaaagcaaaaacaa-cttacaaagttcaatgaaacttgagcatag----tactttcataatacta-----gcaaacaaaacatc 266  Q
    ||||||| |||||||||||| |||||| || ||||||||||||||| ||||||||||||||    || ||| | |||||||     |||||||| |||||    
T  29659323 tcagagaggtaaatcttaaaacaaaaaaaaacttacaaagttcaatcaaacttgagcatagcagttagtttgagaatactatactagcaaacaagacatc 29659224  T
Q  267 catgacgatgcaagaagactttcttctttctgtca 301  Q
     |||||| ||||||||||||||| |||||||||||    
T  29659223 aatgacgttgcaagaagactttcctctttctgtca 29659189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 29719270 - 29719216
Alignment:
Q  247 atactagcaaacaaaacatccatgacgatgcaagaagactttcttctttctgtca 301  Q
    |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  29719270 atactagcaaacaagacatccatgacgttgcaagaagactttcctctttctgtca 29719216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 490
Target Start/End: Complemental strand, 6594505 - 6594396
Alignment:
Q  381 ctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaatt 480  Q
    ||||||||||||| ||||||| ||||||| ||  ||| |||||||| ||||||||||||| ||||||||| ||||   |||||| |||||||||| ||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaagtgctcacagcgagccaaacaaagagacttcaatt 6594406  T
Q  481 gagggcttac 490  Q
    ||||| ||||    
T  6594405 gagggtttac 6594396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 534 - 597
Target Start/End: Complemental strand, 6602937 - 6602874
Alignment:
Q  534 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| | | ||||||||    
T  6602937 ttccattttgatctcactaagtgaaggacagtttttaacaagtgaaaacaaggataattctgtg 6602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 6426279 - 6426345
Alignment:
Q  154 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 220  Q
    |||||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  6426279 tgacattttaaaaaggctatttctcagagaagtaaatcataaaacaaaaacaacttacaatgttcaa 6426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 597
Target Start/End: Complemental strand, 6594334 - 6594272
Alignment:
Q  535 tccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    ||||||||||| ||||||||| |||||||  || |||||||||||||||||||||||||||||    
T  6594334 tccattttgatatcactaagtaaaggacaacttctaacaagtgaaaacaaagctgattctgtg 6594272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 527 - 597
Target Start/End: Complemental strand, 7993921 - 7993851
Alignment:
Q  527 ttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    |||||| |||||||||||| |||| |||||| ||||||||| |||| ||||||||||| ||||||||||||    
T  7993921 ttgtgcgttccattttgatttcacgaagtgatggacagtttctaacgagtgaaaacaaggctgattctgtg 7993851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 7442677 - 7442584
Alignment:
Q  153 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatacta 252  Q
    ||||||||| |||||| |||||||||| |||| ||||||||||| ||||||||||||  |||||| |||    ||| ||||| |||||||||||||||||    
T  7442677 ttgacatttaaaaaaactaatttctcaaagaaataaatcttaaaacaaaaacaactt--aaagtttaat----ctttagcatggtactttcataatacta 7442584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 6394611 - 6394710
Alignment:
Q  154 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactag 253  Q
    |||||||||||||| | |||||||||||||||||||| || || |||||| ||||||||  ||||    |||||| ||||||| | ||||| ||||||||    
T  6394611 tgacattttaaaaaggaaatttctcagagaagtaaatgttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatactag 6394706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 597
Target Start/End: Original strand, 6426854 - 6426923
Alignment:
Q  528 tgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    ||||| ||||||||| || ||||||| ||||||||||||| |||||||||||||||| | || |||||||    
T  6426854 tgtgccttccattttaatctcactaattgaaggacagtttctaacaagtgaaaacaatgttgtttctgtg 6426923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 6589665 - 6589617
Alignment:
Q  164 aaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 212  Q
    ||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  6589665 aaaaagtaatttctcagagaagtgaatattaaaacaaaaacaacttaca 6589617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 6597244 - 6597184
Alignment:
Q  160 tttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 220  Q
    ||||||||| |||||||||||| |||||||| ||||| ||||||||||| ||| |||||||    
T  6597244 tttaaaaaactaatttctcagaaaagtaaattttaaaacaaaaacaactgacagagttcaa 6597184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 14820443 - 14820498
Alignment:
Q  157 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 212  Q
    ||||||||||| | || |||||||||| |||||||||||| |||||||||||||||    
T  14820443 cattttaaaaaggcaaattctcagagatgtaaatcttaaaacaaaaacaacttaca 14820498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 597
Target Start/End: Original strand, 7131973 - 7132047
Alignment:
Q  523 atagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    |||| |||| ||||||||||||  |||||||||||||| |||||| |||| |||||| |||| ||| ||||||||    
T  7131973 atagctgtgtattccattttgaactcactaagtgaagggcagtttctaacgagtgaatacaaggctaattctgtg 7132047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 488
Target Start/End: Complemental strand, 7994080 - 7993974
Alignment:
Q  382 tcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactttaattg 481  Q
    ||||||| |||| || |||||| ||||| |||  || |||||||| ||||||| |||||||||| || ||||||   || ||| |||||||||| |||||    
T  7994080 tcaaatcgagcatctgcaaatttgggaaaatggtagcaaacaatatgatgtttgcatctctcaactgttgacagagagctaaacaaagagacttcaattg 7993981  T
Q  482 agggctt 488  Q
    |||||||    
T  7993980 agggctt 7993974  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 547 - 595
Target Start/End: Original strand, 6423597 - 6423645
Alignment:
Q  547 tcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctg 595  Q
    ||||||||||||||||||||| |||| ||||||||||||| || |||||    
T  6423597 tcactaagtgaaggacagtttctaacgagtgaaaacaaagttgtttctg 6423645  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 14818165 - 14818220
Alignment:
Q  157 cattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttaca 212  Q
    ||||||||||| | || |||||| ||| |||||||||||| |||||||||||||||    
T  14818165 cattttaaaaaggcaaattctcaaagatgtaaatcttaaaacaaaaacaacttaca 14818220  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 6594934 - 6594884
Alignment:
Q  170 taatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 220  Q
    ||||||| ||||||| ||||||||||| ||||| ||||||||||| |||||    
T  6594934 taatttcgcagagaattaaatcttaaaacaaaagcaacttacaaaattcaa 6594884  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Complemental strand, 10579487 - 10579426
Alignment:
Q  534 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctg 595  Q
    |||||||||||| |||||||| |||||||| ||| | || || |||||||| ||||||||||    
T  10579487 ttccattttgatctcactaagcgaaggacaatttcttacgagggaaaacaaggctgattctg 10579426  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 15092503 - 15092404
Alignment:
Q  154 tgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaatgaaacttgagcatagtactttcataatactag 253  Q
    |||||||||||||| | ||||||||||||||||||||||| || |||||| ||||||||  ||||    |||||| ||||||| | ||||| ||||||||    
T  15092503 tgacattttaaaaaggaaatttctcagagaagtaaatcttgaaacaaaaagaacttacagtgttc----aaacttcagcatagcaatttcagaatactag 15092408  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 10170378 - 10170311
Alignment:
Q  153 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 220  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| ||||||| ||||||| |||||||    
T  10170378 ttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaa 10170311  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 10177903 - 10177836
Alignment:
Q  153 ttgacattttaaaaaagtaatttctcagagaagtaaatcttaaagcaaaaacaacttacaaagttcaa 220  Q
    |||||||||||||| | |||||||||| |||| ||||||||||| ||||||| ||||||| |||||||    
T  10177903 ttgacattttaaaatattaatttctcaaagaactaaatcttaaaacaaaaaccacttacagagttcaa 10177836  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 597
Target Start/End: Complemental strand, 15091888 - 15091820
Alignment:
Q  529 gtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    ||||||| ||||||||| ||| |||| |||||||||||| || | ||||||||||| | || |||||||    
T  15091888 gtgcatttcattttgatttcaataagcgaaggacagtttctaccgagtgaaaacaaggttgtttctgtg 15091820  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 523 - 597
Target Start/End: Complemental strand, 20477825 - 20477751
Alignment:
Q  523 atagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattctgtg 597  Q
    |||| |||| ||||||||||||| |||| |||||||||||||||| |||| |||||| |||| ||| ||||||||    
T  20477825 atagatgtgtattccattttgatctcacaaagtgaaggacagtttctaactagtgaatacaaggctaattctgtg 20477751  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 522 - 593
Target Start/End: Complemental strand, 17627800 - 17627729
Alignment:
Q  522 aatagttgtgcattccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagctgattc 593  Q
    ||||| ||||||||||||||| || ||| ||||||||||||| ||  |||| ||||||||||| ||||||||    
T  17627800 aatagatgtgcattccatttttatctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattc 17627729  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 529 - 572
Target Start/End: Complemental strand, 10634171 - 10634128
Alignment:
Q  529 gtgcattccattttgatgtcactaagtgaaggacagtttgtaac 572  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||    
T  10634171 gtgcattccattttgatctcactaagtgaaggacagtttctaac 10634128  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 534 - 584
Target Start/End: Complemental strand, 53761517 - 53761467
Alignment:
Q  534 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaa 584  Q
    |||||||||||| ||||||||||||||||||||| || |||||| ||||||    
T  53761517 ttccattttgatctcactaagtgaaggacagtttttagcaagtgcaaacaa 53761467  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 512
Target Start/End: Complemental strand, 10634338 - 10634202
Alignment:
Q  376 aatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaagtgctgacagtccgccaaagaaagagactt 475  Q
    |||| |||||||| ||||| ||||| ||||| || ||| ||| |||||| | ||||| |||||||| |||  ||| |||||  |||||| ||||||||||    
T  10634338 aataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctcccaacagctcacagtgagccaaacaaagagactt 10634239  T
Q  476 taattgagggcttacttcaaagtccgtcaaagaatta 512  Q
     | |||||| ||| |  |||| ||| |||||||||||    
T  10634238 aagttgaggtcttccaacaaaatccctcaaagaatta 10634202  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 3438393 - 3438352
Alignment:
Q  522 aatagttgtgcattccattttgatgtcactaagtgaaggaca 563  Q
    ||||| ||||||||||||||| || |||||||||||||||||    
T  3438393 aatagatgtgcattccatttttatctcactaagtgaaggaca 3438352  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 587
Target Start/End: Complemental strand, 21834116 - 21834063
Alignment:
Q  534 ttccattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaaagc 587  Q
    |||||||||||| |||||||| ||| |||||||  ||||||||| |||||||||    
T  21834116 ttccattttgatctcactaagcgaatgacagttcttaacaagtgtaaacaaagc 21834063  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 537 - 584
Target Start/End: Complemental strand, 514454 - 514407
Alignment:
Q  537 cattttgatgtcactaagtgaaggacagtttgtaacaagtgaaaacaa 584  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  514454 cattttgatctcactaagtgaaggacagttcttaacaagtgcaaacaa 514407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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