View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_23 (Length: 381)
Name: NF14614_high_23
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 3 - 362
Target Start/End: Complemental strand, 10029309 - 10028949
Alignment:
| Q |
3 |
gaacatccgaaattagattagttgctgctctaaaaatgaaggaagctgctagggctgccgaagcaactgcacttgctgagataaaagcgttatcttatta |
102 |
Q |
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| T |
10029309 |
gaacatccgaaattagattagttgctgctcgaaaaatgaaggaagctgctcgggccgccgaagcagctgcacttgccgagataaaagcgttatcttatta |
10029210 |
T |
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| Q |
103 |
tgacggacactgtgtgcaaaagtgtgatggagttactcttacctttgaggagtataatgctctaacatgcaaagctagagaggtagatgaacaatctaag |
202 |
Q |
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| T |
10029209 |
tgacggaaactgtgtgcaaaagtgtgatggagttactcttacctttgaggagtataatgctctaacatgcaaagctagagaggtagatgaacaatctaag |
10029110 |
T |
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| Q |
203 |
aagagagttcatgatgctatgtttcaagttgacgaagcaaatgtatcgaaaatggatgttttaaaaagggttgaagaagctacattcgaagttaaaacaa |
302 |
Q |
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| T |
10029109 |
aagagagttcatgatgctatgtttcaagttgaagaagcaaatgtatcgaaaatggatgttttaaaaagggttgaagaagctacatttgaagttaaaacaa |
10029010 |
T |
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| Q |
303 |
g-aaaaaggctcttgaagaagctttggaaagagtagaggctgctaatagagggaagttagt |
362 |
Q |
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| T |
10029009 |
gcaagcaggctcttgaagaagctttggaaagagtagaggctgcaaatagagggaaattagt |
10028949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 359
Target Start/End: Original strand, 26987417 - 26987604
Alignment:
| Q |
173 |
aaagctagagaggtagatgaacaatctaagaagagagttcatgatgctatgtttcaagttgacgaagcaaatgtatcgaaaatggatgttttaaaaaggg |
272 |
Q |
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| T |
26987417 |
aaagctcgagaggccgaggaacaatcaaagaagagagtagcagatgctatgcttgaagttgatgaagcaaattcttcgcagatggatgtttttaaaaggg |
26987516 |
T |
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| Q |
273 |
ttgaagaagctacattcgaagttaaaacaagaaa-aaggctcttgaagaagctttggaaagagtagaggctgctaatagagggaagtt |
359 |
Q |
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| T |
26987517 |
tagaggaagcaacagaagaagttcaaacttgcaagaaggcccttgaagaagctctacaaagggtagaggctgcagatagagggaagtt |
26987604 |
T |
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