View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_high_25 (Length: 360)

Name: NF14614_high_25
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_high_25
NF14614_high_25
[»] chr5 (3 HSPs)
chr5 (15-355)||(42261329-42261669)
chr5 (216-265)||(42777155-42777204)
chr5 (174-238)||(37512020-37512084)
[»] chr4 (1 HSPs)
chr4 (119-245)||(42448872-42448998)
[»] chr2 (2 HSPs)
chr2 (176-263)||(29353303-29353390)
chr2 (179-252)||(44919370-44919443)
[»] chr1 (3 HSPs)
chr1 (225-284)||(40399710-40399769)
chr1 (174-272)||(367933-368031)
chr1 (176-263)||(51869132-51869219)
[»] chr8 (2 HSPs)
chr8 (188-254)||(31135859-31135925)
chr8 (176-253)||(4027038-4027115)
[»] chr7 (3 HSPs)
chr7 (176-253)||(30249009-30249086)
chr7 (152-245)||(5441502-5441595)
chr7 (152-245)||(5450512-5450605)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 42261329 - 42261669
Alignment:
Q  15 cactttgctcctttgaatatacatttcggaaatgcatgcagactgcactacatctttctcctcttaatcaccctcaaagctggagatggacaattcactg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261329 cactttgctcctttgaatatacatttcggaaatgcatgcagactgcactacatctttctcctcttaatcaccctcaaagctggagatggacaattcactg 42261428  T
Q  115 gctattgctgtcattgacgaaaaggtttggatcaatttacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggttta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261429 gctattgctgtcattgacgaaaaggtttggatcaatttacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggttta 42261528  T
Q  215 tatgtgtatgcaaatcatggtctctcttattcgaaaaccccaatttcattaagatgtactgcaacaatattttatgtaatgatcattctgattatgatga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42261529 tatgtgtatgcaaatcatggtctctcttattcgaaaaccccaatttcattaagatgtactgcaacaatattttatgtaatgatcattctgattatgatga 42261628  T
Q  315 tacatttctcatcttacataaactgccttttaagtattatc 355  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  42261629 tacatttctcatcttacataaactgccttttaattattatc 42261669  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 42777155 - 42777204
Alignment:
Q  216 atgtgtatgcaaatcatggtctctcttattcgaaaaccccaatttcatta 265  Q
    |||||| ||||||||||||||||||||||| || ||||| ||||||||||    
T  42777155 atgtgtgtgcaaatcatggtctctcttatttgataaccctaatttcatta 42777204  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 37512020 - 37512084
Alignment:
Q  174 cattttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctc 238  Q
    |||||| |||||||||||| | ||||| ||||| || |||  || ||||||||||||||||||||    
T  37512020 cattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctc 37512084  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 42448872 - 42448998
Alignment:
Q  119 ttgctgtcattgacgaaaaggtttggatcaatttacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggtttatatg 218  Q
    ||||||||| | ||||||||||||| | | |||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||| | |||  |||    
T  42448872 ttgctgtcactaacgaaaaggtttgcaactatttacctcatgatatagtgctcttcattttgtcaaaacttcccttaaaatcattgaagagatttcaatg 42448971  T
Q  219 tgtatgcaaatcatggtctctcttatt 245  Q
     |||||||||  |||||||||||||||    
T  42448972 cgtatgcaaactatggtctctcttatt 42448998  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 29353390 - 29353303
Alignment:
Q  176 ttttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaaccccaatttcat 263  Q
    ||||||||||||| ||||||||||| |||||||| |||  ||| |||   ||| |||||||||||||||| |||||||| ||||||||    
T  29353390 ttttgtcaaaacttcctttaaaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttgaaaaccctaatttcat 29353303  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 44919443 - 44919370
Alignment:
Q  179 tgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaac 252  Q
    |||||||||| ||||||||||| || ||||  |||  ||||||| | ||||||||| |||||||||| ||||||    
T  44919443 tgtcaaaacttcctttaaaatcttttaagccatttgaatgtgtacgtaaatcatgggctctcttatttgaaaac 44919370  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 40399769 - 40399710
Alignment:
Q  225 caaatcatggtctctcttattcgaaaaccccaatttcattaagatgtactgcaacaatat 284  Q
    |||||||||| |||| |||||||||||||| |||||||| || |||||| ||||||||||    
T  40399769 caaatcatggactcttttattcgaaaaccctaatttcatgaacatgtaccgcaacaatat 40399710  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 367933 - 368031
Alignment:
Q  174 cattttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaaccccaatttcattaagatgta 272  Q
    |||| |||||||||||||| ||||||| ||||  || |||| ||||||| |||||||||||   |||||||| || ||||| |||||||| || |||||    
T  367933 cattatgtcaaaactgcctctaaaatctttgactcgatttaaatgtgtacgcaaatcatgggtactcttatttgataaccctaatttcatgaacatgta 368031  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 51869132 - 51869219
Alignment:
Q  176 ttttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaaccccaatttcat 263  Q
    ||||||||||||| || |||||||| ||||| || |||  ||||| || |||| |||||||||||||||| ||| ||||  |||||||    
T  51869132 ttttgtcaaaacttccgttaaaatctttgaaacgatttggatgtgcatacaaaccatggtctctcttatttgaagaccctcatttcat 51869219  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 31135925 - 31135859
Alignment:
Q  188 tgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaaccc 254  Q
    ||||||||||||  |||||||| |||  ||||||||||||| |||||||||| ||||| ||||||||    
T  31135925 tgcctttaaaattcttgaagcgatttgcatgtgtatgcaaaccatggtctcttttatttgaaaaccc 31135859  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 4027038 - 4027115
Alignment:
Q  176 ttttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaacc 253  Q
    ||||||| ||||| ||||||||||| ||||| || |||  |||||||  |||| |||||||||||||||| |||||||    
T  4027038 ttttgtcgaaacttcctttaaaatctttgaaacgttttggatgtgtacacaaaccatggtctctcttatttgaaaacc 4027115  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 30249009 - 30249086
Alignment:
Q  176 ttttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttattcgaaaacc 253  Q
    ||||||||||||| ||||||||||| || ||||| |||  ||||| |  |||| |||||||||||||||| |||||||    
T  30249009 ttttgtcaaaacttcctttaaaatctttaaagcgttttgaatgtgcacacaaaacatggtctctcttatttgaaaacc 30249086  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 5441502 - 5441595
Alignment:
Q  152 tacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttatt 245  Q
    ||||| ||||||||||  |||  |||||||||||| ||||| | ||||||||||| || |||  ||| ||| ||||||| |||||| |||||||    
T  5441502 tacctaatgatcttgtcttctctattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatcgtggtctatcttatt 5441595  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 245
Target Start/End: Original strand, 5450512 - 5450605
Alignment:
Q  152 tacctcatgatcttgtgctcttcattttgtcaaaactgcctttaaaatcattgaagcggtttatatgtgtatgcaaatcatggtctctcttatt 245  Q
    ||||| ||||||||||  |||  |||||||||||| ||||| | ||||||||||| || |||  ||| ||| ||||||| |||||| |||||||    
T  5450512 tacctaatgatcttgtcttctctattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatcgtggtctatcttatt 5450605  T

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