View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_35 (Length: 319)
Name: NF14614_high_35
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 44725201 - 44725511
Alignment:
| Q |
9 |
aatattggcattactcgaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaaga |
108 |
Q |
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| T |
44725201 |
aatattggcattacttgaaaataaccctagtttgagccaattaatcggatttgtgttggataagaactcggcattagagaagccaaaagcttgccaaaga |
44725300 |
T |
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| Q |
109 |
gaacgagaggctaatggatctctaatgcactgaaggaaagattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaag |
208 |
Q |
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| T |
44725301 |
gaacgagaggctaatggatctctaatgcactgaaggaaatattcttcttccgaattgaactgatggcaatgctattgggagccatgttacaatgatgaag |
44725400 |
T |
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| Q |
209 |
caaaggaatcattgttacaaagttgttacaagtcaaccatacaagaaactagatcttttcaggcaaatggagtcgtcatatccaagactatgatagagta |
308 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44725401 |
caaagggatcattgttacaaagttgttacaagtcaaccatacaagaaactagatcttttcaggcaaatgaagtcgtcatatccaagactatgatagagta |
44725500 |
T |
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| Q |
309 |
gttgtattcat |
319 |
Q |
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||||||||||| |
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| T |
44725501 |
gttgtattcat |
44725511 |
T |
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