View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_36 (Length: 318)
Name: NF14614_high_36
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 30312125 - 30312326
Alignment:
| Q |
1 |
aagtaagtgaatatt-agtgagtgaggtgatcatacttnnnnnnnnagaggtcg---tgttagttcgaaatattttttcaacgacaaatgaactcgacga |
96 |
Q |
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| T |
30312125 |
aagtaagtgaatattgagtgagtgaggtgatcatacttggggggg-agaggtcgtcgtgttagttcgaaatattttctcaacgacaaatgaactcgacga |
30312223 |
T |
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| Q |
97 |
gcaatttaggatacaagttaaatcattatatctta--------gtctacgtgtaacacgccttaatttgtgaatcaaagaaacgtgcaagattttgaaca |
188 |
Q |
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| T |
30312224 |
gcaatttagaatacaagttaaattattatatcttagtcggcaggtctacgtgtaacacgccttaatttgtgaatcaaagaaacgtgcaggattttgaaca |
30312323 |
T |
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| Q |
189 |
tat |
191 |
Q |
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||| |
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| T |
30312324 |
tat |
30312326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 231 - 318
Target Start/End: Original strand, 30312365 - 30312452
Alignment:
| Q |
231 |
tcaatttgtgatatacatacattgttctttcaacattgctgtaagaacatgaacatcatcttgggagggtggatgtgtttctaataga |
318 |
Q |
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| T |
30312365 |
tcaatttgtgattttcatacattgttctttcaacgttgcagtaagaacatgaacattatcttgtgaggatggatgtgtttctaataga |
30312452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 30638884 - 30638924
Alignment:
| Q |
80 |
acaaatgaactcgacgagcaatttaggatacaagttaaatc |
120 |
Q |
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| T |
30638884 |
acaaataaactcggcgagcaatctaggatacaagttaaatc |
30638924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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