View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_high_38 (Length: 301)

Name: NF14614_high_38
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_high_38
NF14614_high_38
[»] chr6 (7 HSPs)
chr6 (1-284)||(3445225-3445507)
chr6 (105-162)||(2285561-2285618)
chr6 (1-46)||(20771628-20771673)
chr6 (1-46)||(21611012-21611057)
chr6 (105-141)||(21611116-21611152)
chr6 (1-53)||(33629357-33629409)
chr6 (105-140)||(33629460-33629495)
[»] chr3 (3 HSPs)
chr3 (1-55)||(51380953-51381007)
chr3 (1-58)||(54524935-54524992)
chr3 (107-143)||(51381055-51381091)
[»] chr7 (1 HSPs)
chr7 (105-159)||(28443765-28443819)
[»] chr1 (5 HSPs)
chr1 (1-55)||(68997-69051)
chr1 (105-164)||(36979732-36979791)
chr1 (1-58)||(28108113-28108170)
chr1 (1-58)||(46878157-46878214)
chr1 (105-161)||(25992971-25993027)
[»] chr2 (5 HSPs)
chr2 (107-163)||(25271846-25271902)
chr2 (1-46)||(12037301-12037346)
chr2 (1-46)||(27249856-27249901)
chr2 (105-140)||(5357571-5357606)
chr2 (1-55)||(29699589-29699643)
[»] chr8 (3 HSPs)
chr8 (105-143)||(41581146-41581184)
chr8 (1-54)||(9780362-9780415)
chr8 (6-58)||(5920871-5920923)
[»] chr5 (1 HSPs)
chr5 (1-47)||(37283756-37283802)
[»] chr4 (4 HSPs)
chr4 (1-46)||(21512012-21512057)
chr4 (4-58)||(18489617-18489671)
chr4 (1-55)||(24699455-24699509)
chr4 (1-53)||(12868424-12868476)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 3445507 - 3445225
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcagccttcttnnnnnnnnncatcatcgacagttaactgtgaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||| ||||||||||||||||||    
T  3445507 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcagccttcttaaaaaaaa-catcatcaacagttaactgtgaagaa 3445409  T
Q  101 taagcatttacgtctttttctaatgtgtttcagccttgtttgaggcatgaacaacaattttcatggagatatgggtcgagaccttaatccagtccaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3445408 taagcatttacgtctttttctaatgtgtttcagccttgtttgaggtatgaacaacaattttcatggagatatgggtcgagaccttaatccattccaatta 3445309  T
Q  201 gtatgccgtaaatgatagatgttaggttggaagtgccaacatagttatgtcattgctaccatatagactattgcgctatttttc 284  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3445308 gtgtgccgtaaatgatagatgttaggttggaagtgccaacatagttatgtcattgctaccatatagactattgcgctatttttc 3445225  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 2285618 - 2285561
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtttgaggcatgaacaacaattttc 162  Q
    |||||||||||||||||||||||||||| |||||||||| |  |||||| ||||||||    
T  2285618 catttacgtctttttctaatgtgtttcaaccttgtttgaagtgtgaacagcaattttc 2285561  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20771628 - 20771673
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataa 46  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||||    
T  20771628 cacacttcactcaatgctagaaaatactagaaatttatcaatataa 20771673  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21611012 - 21611057
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataa 46  Q
    |||||||||| |||| |||| |||||||||||||||||||||||||    
T  21611012 cacacttcactcaatactagaaaatactagtaatttatcaatataa 21611057  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 21611116 - 21611152
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgttt 141  Q
    ||||||||||||||||||||||||||||||| |||||    
T  21611116 catttacgtctttttctaatgtgtttcagccatgttt 21611152  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33629357 - 33629409
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatc 53  Q
    |||||||||| ||||||||||||| | |||||||||| ||||||||| |||||    
T  33629357 cacacttcactcaatgctaggaaacaatagtaatttaccaatataatctcatc 33629409  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Original strand, 33629460 - 33629495
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtt 140  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33629460 catttacgtctttttctgatgtgtttcagccttgtt 33629495  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 51380953 - 51381007
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcgg 55  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||    
T  51380953 cacacttcactcaatgctaggaaacactagtaatttatcaatataacatcatcgg 51381007  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 54524935 - 54524992
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcag 58  Q
    |||||||||| ||||| |||||||||||||| |||||  |||||||  ||||||||||    
T  54524935 cacacttcactcaatgttaggaaatactagttatttactaatataacctcatcggcag 54524992  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 51381055 - 51381091
Alignment:
Q  107 tttacgtctttttctaatgtgtttcagccttgtttga 143  Q
    |||||||||||||||  ||||||||||||||||||||    
T  51381055 tttacgtctttttctggtgtgtttcagccttgtttga 51381091  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 28443765 - 28443819
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtttgaggcatgaacaacaatt 159  Q
    |||||||||||||||||| |||||||||||||||||||| |  ||||||||||||    
T  28443765 catttacgtctttttctagtgtgtttcagccttgtttgaagtgtgaacaacaatt 28443819  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 69051 - 68997
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcgg 55  Q
    |||||||||| ||||||||||| | ||||||||||||||||||||| ||||||||    
T  69051 cacacttcactcaatgctaggacacactagtaatttatcaatataacatcatcgg 68997  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 36979791 - 36979732
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtttgaggcatgaacaacaattttcat 164  Q
    |||||||||||||||||  ||||||||||| ||||| || || |||| ||||||||||||    
T  36979791 catttacgtctttttctggtgtgtttcagctttgttagaagcgtgaaaaacaattttcat 36979732  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28108113 - 28108170
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcag 58  Q
    |||||||||| || | |||||||| |||||||||||| ||||||||  ||||||||||    
T  28108113 cacacttcactcagtactaggaaacactagtaatttaccaatataacttcatcggcag 28108170  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 46878157 - 46878214
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcag 58  Q
    |||||||||| ||||||||||||| || | |||||||| |||||||| | ||||||||    
T  46878157 cacacttcactcaatgctaggaaacaccaataatttataaatataatcttatcggcag 46878214  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 25993027 - 25992971
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtttgaggcatgaacaacaatttt 161  Q
    ||||||||||||||||| |||| |||||| ||||||||| |  |||||| |||||||    
T  25993027 catttacgtctttttctgatgtatttcagacttgtttgaagtgtgaacatcaatttt 25992971  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 25271846 - 25271902
Alignment:
Q  107 tttacgtctttttctaatgtgtttcagccttgtttgaggcatgaacaacaattttca 163  Q
    ||||||||||||||| ||||||||||||||||||||| |  | ||||||||||||||    
T  25271846 tttacgtctttttctgatgtgtttcagccttgtttgaagtgtaaacaacaattttca 25271902  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12037301 - 12037346
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataa 46  Q
    |||||||||| ||||||||||||| || ||||||||||||||||||    
T  12037301 cacacttcactcaatgctaggaaacaccagtaatttatcaatataa 12037346  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27249901 - 27249856
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataa 46  Q
    |||||||||| ||||| ||||||| |||||||||||||||||||||    
T  27249901 cacacttcactcaatgttaggaaacactagtaatttatcaatataa 27249856  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 5357606 - 5357571
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtt 140  Q
    |||||||||||||||||| |||||||||||||||||    
T  5357606 catttacgtctttttctagtgtgtttcagccttgtt 5357571  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 29699643 - 29699589
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcgg 55  Q
    |||||||||| ||||| ||||||| |||||||||||| ||||||||  |||||||    
T  29699643 cacacttcactcaatgttaggaaacactagtaatttaccaatataacctcatcgg 29699589  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 41581146 - 41581184
Alignment:
Q  105 catttacgtctttttctaatgtgtttcagccttgtttga 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  41581146 catttacgtctttttctagtgtgtttcagccttgtttga 41581184  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9780362 - 9780415
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcg 54  Q
    |||||||||| ||||||||| |||||  |||||||||||||||||| |||||||    
T  9780362 cacacttcactcaatgctagaaaatataagtaatttatcaatataacatcatcg 9780415  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 5920923 - 5920871
Alignment:
Q  6 ttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcag 58  Q
    ||||| ||||||||||||| || |||| |||| ||||||||| ||||||||||    
T  5920923 ttcactcaatgctaggaaacaccagtactttaccaatataatctcatcggcag 5920871  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37283802 - 37283756
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataat 47  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||    
T  37283802 cacacttcactcaatgctaggaaacacgagtaatttatcaatataat 37283756  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21512012 - 21512057
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataa 46  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||    
T  21512012 cacacttcactcaatgctaggaaacactactaatttatcaatataa 21512057  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 18489617 - 18489671
Alignment:
Q  4 acttcacacaatgctaggaaatactagtaatttatcaatataatatcatcggcag 58  Q
    ||||||| ||||| || |||| |||||||||||| ||||||||| ||||||||||    
T  18489617 acttcactcaatgttaagaaacactagtaatttaccaatataatttcatcggcag 18489671  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 24699509 - 24699455
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatcgg 55  Q
    |||||||||  |||| |||||||| |||||||||||||||| |||| ||||||||    
T  24699509 cacacttcaatcaattctaggaaacactagtaatttatcaacataacatcatcgg 24699455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12868424 - 12868476
Alignment:
Q  1 cacacttcacacaatgctaggaaatactagtaatttatcaatataatatcatc 53  Q
    |||||||||| ||||| ||| ||| | |||||||||||||||||||| |||||    
T  12868424 cacacttcactcaatgttagaaaacattagtaatttatcaatataatctcatc 12868476  T

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