View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_high_4 (Length: 581)

Name: NF14614_high_4
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_high_4
NF14614_high_4
[»] chr6 (2 HSPs)
chr6 (16-466)||(31943775-31944246)
chr6 (495-565)||(31944275-31944345)
[»] chr5 (3 HSPs)
chr5 (310-466)||(9394578-9394734)
chr5 (495-563)||(9394767-9394835)
chr5 (144-232)||(9394445-9394534)
[»] chr7 (4 HSPs)
chr7 (253-434)||(1342060-1342243)
chr7 (495-563)||(1342324-1342392)
chr7 (16-114)||(1341881-1341981)
chr7 (153-223)||(1341983-1342052)
[»] chr2 (1 HSPs)
chr2 (310-404)||(35535403-35535497)
[»] chr4 (1 HSPs)
chr4 (314-425)||(5644299-5644410)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 466
Target Start/End: Original strand, 31943775 - 31944246
Alignment:
Q  16 atgaaccataaaacaaacaattttcagcatgaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacatg 115  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31943775 atgaaccataaaacacacaattttcagcaagaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacata 31943874  T
Q  116 tgaagaaataaaccctnnnnnnnnnnn--ctttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcct 212  Q
    ||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31943875 tgaagaaataaaccctaaaaaaaaaaaaactttcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataaatcct 31943974  T
Q  213 aaaacagcaaacattcaacannnnnnnn---aaggaccaaactcatgaaatcaagtaaaatataagaaaacacaa-----attta---------tcaaca 295  Q
    ||||||||||||||||||||           |||||| |||||||||||||||||||||||||||||||||||||     || ||         ||||||    
T  31943975 aaaacagcaaacattcaacattttttttttgaaggactaaactcatgaaatcaagtaaaatataagaaaacacaagtaaaatataagcaaacattcaaca 31944074  T
Q  296 ttgaatnnnnnnnn-tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaa 394  Q
    ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31944075 ttgaataaaaaaaaatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttgaa 31944174  T
Q  395 actttcatcatcactcgattcactacaaaacacaatcatataatattaattttcaaatcttgcaataacaca 466  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31944175 actttcatcatcactcgattcactacaaaacacaatcatataacattaattttcaaatcttgcaataacaca 31944246  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 495 - 565
Target Start/End: Original strand, 31944275 - 31944345
Alignment:
Q  495 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcattggccggaataggttctccgatg 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31944275 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcggccggaataggttctccgatg 31944345  T

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Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 310 - 466
Target Start/End: Original strand, 9394578 - 9394734
Alignment:
Q  310 tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatcatcact 409  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||    
T  9394578 tagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgccttcaaactttcatcctcact 9394677  T
Q  410 cgattcactacaaaacacaatcatataatattaattttcaaatcttgcaataacaca 466  Q
    |||||||||||||||||||||||||||  | ||| ||||||||||||||||||||||    
T  9394678 cgattcactacaaaacacaatcatatagcagtaaatttcaaatcttgcaataacaca 9394734  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 9394767 - 9394835
Alignment:
Q  495 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcattggccggaataggttctccga 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  9394767 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcatcagccggaataggttctccga 9394835  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 9394445 - 9394534
Alignment:
Q  144 tttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca 232  Q
    |||||||||||| ||||||||||||||||||| ||  | ||  ||||||| ||||| ||||||||| ||||||||| ||||  |||||||    
T  9394445 tttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaaca 9394534  T

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Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 253 - 434
Target Start/End: Original strand, 1342060 - 1342243
Alignment:
Q  253 catgaaatcaagtaaaatataagaaaa-cacaaatttatcaacattgaatnnnnnnnn-tagaaaccttgacataagcattatcgtccagcttatacaaa 350  Q
    |||||||| |||||||||| || |||| |||||||||||||||||| |||         ||||||||||||||||||||||||| ||||||||||| |||    
T  1342060 catgaaataaagtaaaataaaacaaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccagcttatataaa 1342159  T
Q  351 atcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatcatcactcgattcactacaaaacacaatcata 434  Q
    ||||||||||| ||||||||| | ||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||    
T  1342160 atcccatcaaccttcgcttcatgatagtgaaacttcgccttcaaactttcaccctcactcaattcactacaaaacacaatcata 1342243  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 1342324 - 1342392
Alignment:
Q  495 ctcactcgttcttggtgtatcggtgaggccatttcttttgagcttcattggccggaataggttctccga 563  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||||    
T  1342324 ctcactcgttcttggtgtaccggtgaggccatttcttttgtgcttcatcagccggaataggttctccga 1342392  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 1341881 - 1341981
Alignment:
Q  16 atgaaccataaaacaaacaattttcagcatgaaatcatgtc-aattaaaatataatttccaacatgaagaaataaaccct-gaaaacaaaattttcaaca 113  Q
    ||||||||||||||| |||||||| |||| ||||||||||| ||  ||||| |||||||||||| |||||||||||||||  ||||||||||||| ||||    
T  1341881 atgaaccataaaacacacaattttaagcaagaaatcatgtcaaagaaaaatttaatttccaacaagaagaaataaaccctaaaaaacaaaattttgaaca 1341980  T
Q  114 t 114  Q
    |    
T  1341981 t 1341981  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 1341983 - 1342052
Alignment:
Q  153 aaatcaaacaaaataacataa-acaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaa 223  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  1341983 aaatcaaacaaaataacataatacac--aattttcaacatgcaatcaaagaaataaaccctaaaacaccaaa 1342052  T

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Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 310 - 404
Target Start/End: Original strand, 35535403 - 35535497
Alignment:
Q  310 tagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatca 404  Q
    ||||||||||||||||||||||||  ||||| ||||| | || |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  35535403 tagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggtaatgaaactacgccttcaaactttcatca 35535497  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 5644299 - 5644410
Alignment:
Q  314 aaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttcaaactttcatcatcactcgat 413  Q
    |||||| |||||||||||||| | ||||||||| | || ||||||||| ||| |||||||||| ||||||||||||||||   | ||||||||||||||     
T  5644299 aaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttcactgtatcatcatcactcgaa 5644398  T
Q  414 tcactacaaaac 425  Q
     ||||| |||||    
T  5644399 ccactagaaaac 5644410  T

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