View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_40 (Length: 297)
Name: NF14614_high_40
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 19433066 - 19433345
Alignment:
| Q |
17 |
atgaagttctgcaagagtaggaaagaaaaatatgtcaatgaagcattattagatctagtagagcttcaaaatccaatgatttannnnnnnacaaaaaatg |
116 |
Q |
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| T |
19433066 |
atgaagttctgcaacagtaggaaagaaaaatatgtcaatgaagcattattagatctagtagagcttcaaaatccaatgatttatttttttacaaaaaatg |
19433165 |
T |
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| Q |
117 |
ttcaatggataatattaaaaacttaatgaagtcttttatatatggaccacctaaaatattggttcagtttagacatttgagattaaaaagttaatcttct |
216 |
Q |
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| T |
19433166 |
ttcaatggataatattaaaaacttaatgaagtcttttatatatggaccacctaaaatattggttcagtttagacatttgaggttaaaaagttaatcttct |
19433265 |
T |
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| Q |
217 |
aagtagagccattttgtttaaatgcattttcaaacagtccttttttatagcatggtacattttttgttcatctcactcga |
296 |
Q |
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| T |
19433266 |
aagtagagccattttgtttaaatgcattttcaaacagtccttttttatagcatggtacattttttgtgcatatcactcga |
19433345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 276
Target Start/End: Original strand, 19387385 - 19387605
Alignment:
| Q |
54 |
atgaagcattattagatctagtagagcttcaaaatccaatgatttannnnnnnaca---aaaaatgttcaatggataatattaaaaacttaatgaagtct |
150 |
Q |
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| T |
19387385 |
atgaagcattattagatctagcagaccttcaaaatccaatgatttatttttttttttataaaaatattcaatggttaatattaaaaaattaatgaa---- |
19387480 |
T |
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| Q |
151 |
tttatatatggaccacctaaaatattggttcagtttagacatttgagattaaaaagttaatcttctaagtagagccattttgtttaaatgcattttcaaa |
250 |
Q |
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| T |
19387481 |
tttttgtgtgtagcatttaaaatattgatccaccttagacatttgagctttaaa-gttaatatttcaaataaagccattttgtttaaatacatcatcaga |
19387579 |
T |
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| Q |
251 |
cagtccttttttatagcatggtacat |
276 |
Q |
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| T |
19387580 |
tagtccttttttataccatggtacat |
19387605 |
T |
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