View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_5 (Length: 573)
Name: NF14614_high_5
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Complemental strand, 5958212 - 5957666
Alignment:
| Q |
19 |
gtctcgcgcttataaacacattttcatatcacatcttacctaatattaataactatgtttttgagtnnnnnnntaagcaaatataagtgtcaaaaatagt |
118 |
Q |
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| T |
5958212 |
gtctcgcgcttataaacacattttcatatcacatcttacctaatattaataactatgtttttgagtaaaaaaataagcaaatataagtgtcaaaaatagt |
5958113 |
T |
|
| Q |
119 |
aacaattaacaatgcaagtaatttaaagctaaaaaacaaaacctctttcaaaacagcaagattcaattcatcactcctaagagaatcctcagcacattcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5958112 |
aacaattaacaatgcaagtaatttaaagctaaaaaacaaaacctctttcaaaacagcaagattcaattcatcactcctaagagaatcctcagcacattcc |
5958013 |
T |
|
| Q |
219 |
ttaacaatctccatccccatcttcccatcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5958012 |
ttaacaatctccatccccatcttcccatcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtct |
5957913 |
T |
|
| Q |
319 |
gcaccttctccttattcatccccaaaacaatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957912 |
gcaccttctccttattcatccccaaaacaatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggc |
5957813 |
T |
|
| Q |
419 |
caccgccacattcgacggtggcccaccaggtgctcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattgga |
518 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5957812 |
caccgccacattcgacggcggcccaccaggtgctcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattgga |
5957713 |
T |
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| Q |
519 |
aactcgtgcacacgcaccgtaggtagaaactccctctgtgctgctcc |
565 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957712 |
aactcctgcacacgcaccgtaggtagaaactccctctgtgctgctcc |
5957666 |
T |
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