View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_high_62 (Length: 227)

Name: NF14614_high_62
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_high_62
NF14614_high_62
[»] chr6 (1 HSPs)
chr6 (1-227)||(34394999-34395224)
[»] chr2 (2 HSPs)
chr2 (136-199)||(13517080-13517143)
chr2 (136-199)||(7707241-7707304)
[»] chr3 (1 HSPs)
chr3 (145-199)||(10950533-10950587)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-199)||(943-1135)
[»] chr5 (1 HSPs)
chr5 (137-180)||(19964284-19964327)
[»] chr1 (3 HSPs)
chr1 (132-183)||(25425669-25425719)
chr1 (131-198)||(16974175-16974242)
chr1 (162-206)||(10683561-10683605)
[»] scaffold1668 (1 HSPs)
scaffold1668 (136-206)||(618-688)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34395224 - 34394999
Alignment:
Q  1 ccaaacccatatgaaaagttgcctataaatatatgaactctcattaacaaattcgcattttgaatacggtagttcaagaggaaggcaagcgttaggagca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||    
T  34395224 ccaaacccatatgaaaagttgcctataaatatatgaactctcattaacaaattcgcattttgaacatggtggttcaagaggaaggcaagcgttaggagca 34395125  T
Q  101 tttatagagtagtcttttctaaacctcttcttttggttactatgagtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgttga 200  Q
    || | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||     
T  34395124 ttaacagagtagtcttttctaaacctcttcttttggttaccatgagtaactaaacgcctattgattagggttctaagatgaacttctatttgtttgttg- 34395026  T
Q  201 aatttaataaaatcaagtctttcatta 227  Q
    |||||||||||||||||||||||||||    
T  34395025 aatttaataaaatcaagtctttcatta 34394999  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 13517080 - 13517143
Alignment:
Q  136 gttactatgagtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgttg 199  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||  | |||||||||||||    
T  13517080 gttaccatgagtaactaaacacctattgattaaggttctgagatgaatctctatttgtttgttg 13517143  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 7707304 - 7707241
Alignment:
Q  136 gttactatgagtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgttg 199  Q
    ||||| |||||||||||||| ||  ||||||| ||||||||||| ||| ||||||| |||||||    
T  7707304 gttaccatgagtaactaaacaccctttgattagggttctaagatcaacctttatttatttgttg 7707241  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 10950587 - 10950533
Alignment:
Q  145 agtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgttg 199  Q
    ||||||||||| |||||| |||||||||||||||||||| | |||||||||||||    
T  10950587 agtaactaaacacctattaattaaggttctaagatgaacctctatttgtttgttg 10950533  T

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Target: scaffold0330 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 943 - 1135
Alignment:
Q  1 ccaaacccatatgaaaagttgcctataaatatatgaactctcattaacaaattcgcattttgaatacggtagttcaagaggaaggcaagcgttaggagca 100  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||| || ||| ||||   ||   | | |||||||||||| ||||||      ||||    
T  943 ccaaacccataagaaaagttgcctataaatacaagaactctcattaaaaatttctcattcaaaacttgatggttcaagaggaatgcaagc------agca 1036  T
Q  101 tttatagagtagtcttttct-aaacctcttcttttggttactatgagtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgttg 199  Q
    |  | |||||||||||| || |||  |  ||||| || ||| |||||||||||||| |||||| |||| ||||||||||| ||| | |||||||||||||    
T  1037 tcaacagagtagtctttcctcaaaatttgtctttagg-taccatgagtaactaaacacctattcattatggttctaagataaacatctatttgtttgttg 1135  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 180
Target Start/End: Complemental strand, 19964327 - 19964284
Alignment:
Q  137 ttactatgagtaactaaacgcctattgattaaggttctaagatg 180  Q
    |||| |||||||||||||| ||||||||||||||||||||||||    
T  19964327 ttacgatgagtaactaaacacctattgattaaggttctaagatg 19964284  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 25425719 - 25425669
Alignment:
Q  132 tttggttactatgagtaactaaacgcctattgattaaggttctaagatgaac 183  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||||||    
T  25425719 tttggttacaatgagtaactaaacacctattgatt-aggttctaagatgaac 25425669  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 16974175 - 16974242
Alignment:
Q  131 ttttggttactatgagtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgtt 198  Q
    |||| ||||| |||| ||||||||| |||||||||||| ||| |||||| ||| | ||||||||||||    
T  16974175 ttttagttaccatgaataactaaacacctattgattaaagttataagataaacctctatttgtttgtt 16974242  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 10683561 - 10683605
Alignment:
Q  162 tgattaaggttctaagatgaacttttatttgtttgttgaaattta 206  Q
    |||||||||||||||||||||| ||| ||| ||||||| ||||||    
T  10683561 tgattaaggttctaagatgaacctttgtttatttgttggaattta 10683605  T

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Target: scaffold1668 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 618 - 688
Alignment:
Q  136 gttactatgagtaactaaacgcctattgattaaggttctaagatgaacttttatttgtttgttgaaattta 206  Q
    ||||| |||||||||||||| ||| ||||||| ||||||| ||| ||| | ||||| ||||||||| ||||    
T  618 gttaccatgagtaactaaacaccttttgattagggttctatgatcaacctctatttatttgttgaatttta 688  T

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