View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_70 (Length: 215)
Name: NF14614_high_70
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_70 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 43289559 - 43289752
Alignment:
| Q |
8 |
tcttgttgcattgatagctgatcctccataaaataatccctttcatcgtaaatgctgttaagattataccaagagtgtgaataaagccatgggtctgaaa |
107 |
Q |
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| T |
43289559 |
tcttgttgcattgatatctgatcctccataaaataatccctttcatcgtaaatgctgttaagattataccaagagtgtgaataaagccatgggtctgaaa |
43289658 |
T |
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| Q |
108 |
ataacatattactcgggtcgggtaattcaaaactcgttcccaaagctggtagttctactatttcaccaagttcatctggtgttgaaggttcatc |
201 |
Q |
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| T |
43289659 |
ataccatattactcgggtcgggtaattcaaaactcgttcctaatgctggtagttctactatttcatcaagttcatctggtgttgaaggttcatc |
43289752 |
T |
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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 25994760 - 25994663
Alignment:
| Q |
7 |
gtcttgttgcattgatagctgatcctccataaaataatccctttcatcgtaaatgctgttaagattataccaagagtgtgaataaagccatgggtctg |
104 |
Q |
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| T |
25994760 |
gtcttgttgcattgatatctgatcctccataaaataatctccttcatcgtaaatgctatcaacattataccaagagtgtgaataaagtcatgggtctg |
25994663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 26092838 - 26092928
Alignment:
| Q |
7 |
gtcttgttgcattgatagctgatcctccataaaataatccctttcatcgtaaatgctgttaagattataccaagagtgtgaataaagccat |
97 |
Q |
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| T |
26092838 |
gtcttgttgcatcgatatctgatcctccataaaataatcccttttatcgtaaatgttgtcaacattataccaagagtgtgaataaagccat |
26092928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 49489 - 49569
Alignment:
| Q |
7 |
gtcttgttgcattgatagctgatcctccataaaataatccctttcatcgtaaatgctgttaagattataccaagagtgtga |
87 |
Q |
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| T |
49489 |
gtcttgttgcattgatatctgatcctccataaaataatccatttcatcgtaaatgctgtcaacattataccaagaatgtga |
49569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 49629 - 49578
Alignment:
| Q |
52 |
atcgtaaatgctgttaagattataccaagagtgtgaataaagccatgggtct |
103 |
Q |
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| T |
49629 |
atcgtaaatgctgtcaacattataccaagagtgtgaataaagtcattggtct |
49578 |
T |
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