View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_high_71 (Length: 212)

Name: NF14614_high_71
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_high_71
NF14614_high_71
[»] scaffold0062 (9 HSPs)
scaffold0062 (20-195)||(13106-13282)
scaffold0062 (22-179)||(8220-8378)
scaffold0062 (22-195)||(14639-14806)
scaffold0062 (110-195)||(24867-24953)
scaffold0062 (110-195)||(35033-35119)
scaffold0062 (108-179)||(8840-8911)
scaffold0062 (143-179)||(15281-15317)
scaffold0062 (143-179)||(25449-25485)
scaffold0062 (143-179)||(35615-35651)


Alignment Details
Target: scaffold0062 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 13282 - 13106
Alignment:
Q  20 tacaatcccttattttccttcattttctattatttcaatttttaattctcctaacaaccattgtgtgaacacccctctaaaacgttatgcttaaatttgc 119  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  13282 tacaatcccttattttccttcattttctattattccaatttttaattatcctaacatccattgtgtgaacacctctctaaaaagttatgcttaaatttgc 13183  T
Q  120 aaatgatcccaataactatcaaccgtgttggttttagtccttgaaagaaaata-ttaatttaaaccttgcaaataac 195  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  13182 aaatgatccctataactatcaagcgtgttggttttagtccttgaaagaaaatatttaatttaatccttgcaaataac 13106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 8378 - 8220
Alignment:
Q  22 caatcccttattttccttcattttctattatttcaatttttaattctcctaacaaccattgtgtgaaca-cccctctaaaacgttatgcttaaatttgca 120  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||| |||| |||||||||||||    
T  8378 caatcccttattttccttcatattctattatttcaatttttaattctcctaacaaccattgtatgaacaccccctcaaaaaagttaggcttaaatttgca 8279  T
Q  121 aatgatcccaataactatcaaccgtgttggttttagtccttgaaagaaaatattaattt 179  Q
    |||| |||| | ||||||| | ||| |||||||||||||||||||||||||||| ||||    
T  8278 aatggtccctagaactatcgagcgtattggttttagtccttgaaagaaaatatttattt 8220  T

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Target: scaffold0062; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 14806 - 14639
Alignment:
Q  22 caatcccttattttccttcattttctattatttcaatttttaattctcctaacaaccattgtgtgaacacccctctaaaacgttatgcttaaatttgcaa 121  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||        |||| | ||||||||||||    
T  14806 caatcccttattttccttcattttctattattccaacttttatttctcctaacaaccattgtgtgaacacccc-------agttaggtttaaatttgcaa 14714  T
Q  122 atgatcccaataactatcaaccgtgttggttttagtccttgaaagaaaata-ttaatttaaaccttgcaaataac 195  Q
    ||| |||| ||||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |||| ||||||||    
T  14713 atggtccctataactatcaagcgtgttggttttagtcattgaaagaaaatatttagtttaatcctttcaaataac 14639  T

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Target: scaffold0062; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 24953 - 24867
Alignment:
Q  110 ttaaatttgcaaatgatcccaataactatcaaccgtgttggttttagtccttgaaagaaaata-ttaatttaaaccttgcaaataac 195  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |||| ||||||||    
T  24953 ttaaatttgcaaatggtccctataactatcaagcgtgttggttttagtcattgaaagaaaatatttagtttaatcctttcaaataac 24867  T

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Target: scaffold0062; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 35119 - 35033
Alignment:
Q  110 ttaaatttgcaaatgatcccaataactatcaaccgtgttggttttagtccttgaaagaaaata-ttaatttaaaccttgcaaataac 195  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |||| ||||||||    
T  35119 ttaaatttgcaaatggtccctataactatcaagcgtgttggttttagtcattgaaagaaaatatttagtttaatcctttcaaataac 35033  T

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Target: scaffold0062; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 8911 - 8840
Alignment:
Q  108 gcttaaatttgcaaatgatcccaataactatcaaccgtgttggttttagtccttgaaagaaaatattaattt 179  Q
    ||||||||||||||||| || | | ||| ||||| |||||||||||||||||||||||||||| ||| ||||    
T  8911 gcttaaatttgcaaatggtctctacaaccatcaagcgtgttggttttagtccttgaaagaaaaaatttattt 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 15317 - 15281
Alignment:
Q  143 cgtgttggttttagtccttgaaagaaaatattaattt 179  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  15317 cgtgttggttttagtccttaaaagaaaatatttattt 15281  T

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Target: scaffold0062; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 25485 - 25449
Alignment:
Q  143 cgtgttggttttagtccttgaaagaaaatattaattt 179  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  25485 cgtgttggttttagtccttaaaagaaaatatttattt 25449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 35651 - 35615
Alignment:
Q  143 cgtgttggttttagtccttgaaagaaaatattaattt 179  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  35651 cgtgttggttttagtccttaaaagaaaatatttattt 35615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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