View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_74 (Length: 202)
Name: NF14614_high_74
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_74 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 14176152 - 14175957
Alignment:
| Q |
7 |
ttcttgttgttgtatttatgacatatgtactcgtgcggtacagattatcaggacgaggagctctagttgcgtgacacttagaaggcggcgatggggaatt |
106 |
Q |
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| T |
14176152 |
ttcttgttgttgtatttatgacatatgtactcgtgcggtatagattatcaggacgaggagctctggttgcgtgacacttagaaggcggcgatggggaatt |
14176053 |
T |
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| Q |
107 |
gttttccatcatttttaaattagtaataaataaacatgtagtcaaatacgagctttgttatgtaactctaggatcagggtggctatttgattccat |
202 |
Q |
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| T |
14176052 |
gttttccatcatttttatattagtaataaataaacatgtagtcaaatacgagctctggtatgtaactctaggatcagggtggctatttgattccat |
14175957 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 32946259 - 32946194
Alignment:
| Q |
32 |
tgtactcgtgcggtacagattatcaggacgaggagctctagttgcgtgacacttagaaggcggcga |
97 |
Q |
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| T |
32946259 |
tgtactcttggggtacagacactcaggacgaggagctctagttgcgggacatttaaaaggtggcga |
32946194 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 20410294 - 20410366
Alignment:
| Q |
34 |
tactcgtgcggtacagattatcaggacgaggagctctagttgcgtgacacttagaaggcggcgatggggaatt |
106 |
Q |
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| T |
20410294 |
tactcgtggggtacagatattcagaacgaggagctctagttgtgagacatttagctggtggtgatggggaatt |
20410366 |
T |
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