View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_8 (Length: 524)
Name: NF14614_high_8
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 173 - 510
Target Start/End: Original strand, 33392520 - 33392859
Alignment:
| Q |
173 |
gtatctatgcaaaagttacttcttttgattttttaaacgagccatgctatatcttgcaaagagagttctcatgaattccgtgaatacggcgttttatact |
272 |
Q |
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| T |
33392520 |
gtatctatgcaaaagttacttcttttgattttttaaacgagccatgctatatcttgcaaagagagttctcatgaattccgtgaatacggcgttttatact |
33392619 |
T |
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| Q |
273 |
tctctcttatatgctcttaaagtcctctaatatttatagctaaaaagaatagatg-ttaattgtaaggaccataggtaatagaaaatcaagaatttatgc |
371 |
Q |
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| T |
33392620 |
tctctcttatatgctcttaaagtcctctaatatttatagctaaaaagaatagatgattaattgtaaggaccataggtaatagaaaatcaagaatttatgc |
33392719 |
T |
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| Q |
372 |
aaatttccatagacacatacaccatcaatattaaagctga-nnnnnnnnnaaaataattatagctcaatttgctgaacagcttcaaacatttaaattagt |
470 |
Q |
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| T |
33392720 |
aaatttccatggacacatacaccatcaatattaaagctgatttttttttaaaaataattatagttcaatttgctgaacagcttcaaacatttaaattagt |
33392819 |
T |
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| Q |
471 |
aagaaccactgatttcttggcatgtttagaagcttcaatt |
510 |
Q |
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| T |
33392820 |
aagaaccactgatttcttggcatgtttagaagcttcaatt |
33392859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 33392391 - 33392535
Alignment:
| Q |
1 |
agttaggacttagggccggataggttggatggtaagctttgattatattttttgggtcatgtgctaacaagtgctctaaaagtgttgtttaagaaagcta |
100 |
Q |
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| T |
33392391 |
agttaggacttagggccggataggttggatggtaagctttgattatattttttgggtcatgtgctaacaagtgctctaaaagtgttgtttaagaaagcta |
33392490 |
T |
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| Q |
101 |
caaaggaaaagtttgtcttcgaaatataagtatctatgcaaaagt |
145 |
Q |
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| T |
33392491 |
caaaggaaaagtttgtcttcgaaatataagtatctatgcaaaagt |
33392535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 17436225 - 17436303
Alignment:
| Q |
42 |
attatattttttggg-tcatgtgctaacaagtgctctaaaagtgttgtttaagaaagctacaaaggaaaagtttgtctt |
119 |
Q |
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| T |
17436225 |
attatattttttggggtcatgttctaacaagtgctctaaatatgttgtcacagaaagctagaaagggaaagtttgtctt |
17436303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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