View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_high_9 (Length: 506)
Name: NF14614_high_9
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 33415470 - 33415888
Alignment:
| Q |
18 |
attccaaatgtccttatcttcaaaaatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctat |
117 |
Q |
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| T |
33415470 |
attccaaatgtccttatcttcaaaaatggtgaacaaagagatacactttttggtaacttacccaaggcaacgtttatcagacgtatggaacaaaacctat |
33415569 |
T |
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| Q |
118 |
gagatgggcaannnnnnnnnnnngttgcatgttttgctttcttgaataatcatcaatcatttgtggttttcaatgaaaaaattataatcatttatgggat |
217 |
Q |
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| T |
33415570 |
gagatgggctatattttttttt-gttgcatgttttgctttcttgaataatca---atcatttgtggttttcaatgaaaaaattataatcatttatgggat |
33415665 |
T |
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| Q |
218 |
gattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaatacacgaatttgagacata |
317 |
Q |
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| T |
33415666 |
gattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaat--acgaatttgagacata |
33415763 |
T |
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| Q |
318 |
ttgaggtttttctttattctctgttgtaagtgaaatttgtgac-ttatgatacataaacacaataatataatggtatttgtgtatttgagttttgctgtt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33415764 |
ttgaggtttttctttattctctgttgtaagtgaaatttgtgactttatgatagataaacacaataatataatggtatttgtgtatttgagttttgctgtt |
33415863 |
T |
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| Q |
417 |
gtaagcaaaccacattttcttaaaa |
441 |
Q |
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| T |
33415864 |
gtaagaaagccacattttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
245 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
339 |
Q |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
340 |
gttgtaagtgaaatttgtg |
358 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
225 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
280 |
Q |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 33397852 - 33397901
Alignment:
| Q |
193 |
aaaaaattataatcatttatgggatgattcccatattgtggtttttagat |
242 |
Q |
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|||||| |||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
33397852 |
aaaaaagtataataatttatggggtgatttgcatattgtggtttttagat |
33397901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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