View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_10 (Length: 498)
Name: NF14614_low_10
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 14 - 495
Target Start/End: Original strand, 33096447 - 33096939
Alignment:
| Q |
14 |
acatttttcattctataacagaacttgtggaacatatcagatgaaaagttgaaatttgttca---------ttttatatccaaatatactcaatttcttg |
104 |
Q |
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| T |
33096447 |
acatttttcattctataacagaacttgtggaacatatcagatgaaaagttgaaatttgttcaaaagtaccattttatatccaaatatactcaatttcttg |
33096546 |
T |
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| Q |
105 |
ctgcagaagttaacaggtcagagaatggttttcatcaccattctttacaagtaaatatgcttttatatgaagtactatggttgctaaactttttatatga |
204 |
Q |
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| T |
33096547 |
ctgcagaagttaacaggtcagagaattgttttcatcaccattctttacaagtaaatatgcttttatatgaagtactatggttgctaaactttttatatga |
33096646 |
T |
|
| Q |
205 |
tt---ctagtaattttagaatactttcatcactagcaatgctatttggtagaaatattgacatcgagatctttattagtagtgttaagggaatggaaata |
301 |
Q |
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| T |
33096647 |
ttattctagtcattttagaatactttcatcactagcaatgctatttggtagaaatattgacatcgagatctttattagtagtgttaagggaatggaaata |
33096746 |
T |
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| Q |
302 |
ttactggctgcattttaattataacatgcctttgtgtatctcatattgttttaaactttatggcatacatgccaacaattctagtagatacacacataac |
401 |
Q |
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| T |
33096747 |
ttactggctgcattttaattataacatgcctttgtgtatctcatattgttttaaactttat-gcatacatgccaacaattctagtagatacacacataac |
33096845 |
T |
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| Q |
402 |
acgtttaaaattttatcacctcttgaattgtatcacttattaaagaaatcaatttaattttatgccaaggtttcattgttttttcttcttctct |
495 |
Q |
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| T |
33096846 |
acatttaaaattttatcacctcttgaattgtatcacttattaaagaaatcaatgtaattttatgccaaggtttcattgttttttcttcttctct |
33096939 |
T |
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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 40743164 - 40743220
Alignment:
| Q |
258 |
ttgacatcgagatctttattagtagtgttaagggaatggaaatattactggctgcat |
314 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
40743164 |
ttgacatggagatctttattagttgtgtcaagggaatggaaatattactggctgcat |
40743220 |
T |
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