View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_12 (Length: 484)
Name: NF14614_low_12
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 41134007 - 41133552
Alignment:
| Q |
18 |
ggtatgttctcatttattactactttagttcactcgtgtcttcgttcttacaccaagatttcaaatgcatcacacccttttcttatcaatgaatttttct |
117 |
Q |
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| T |
41134007 |
ggtatgttctcatttattactactttagttcactcgtgtcttcgttcttacaccaagatttcaaatgcatcacacccttttcttatcaatgaatttttct |
41133908 |
T |
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| Q |
118 |
tcatttttagatcatgattcatgatggtgtgtcttttgatataataatatgtaaccaatctaacaagtaacaaactctgtgtttannnnnnnattgttgt |
217 |
Q |
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| T |
41133907 |
tcatttttagatcatgattcatgatggtgtgtcttttgatataataatatgtaaccaatctaacaagtaacaaactctgtgtttatttttttattgttgt |
41133808 |
T |
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| Q |
218 |
taaatatgaaattttgttatttacatattctttgttctacttgtcnnnnnnnnnnntattatttgttctatttttagcttatgtttttgtttgtgctttg |
317 |
Q |
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| T |
41133807 |
taaatatgaaattttgttatttacatattctttgttctacttgtcaaaaaaaaatatattatttgttctatttttagcttatgtttttgtttgtgctttg |
41133708 |
T |
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| Q |
318 |
tcaggataacgttggacagattgatcacttacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtacttcacat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41133707 |
tcaggataacgttggacagattgatcacttacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtacttcacat |
41133608 |
T |
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| Q |
418 |
taccacattgttgttattcctttatctgcaaatacttttaagatttttctttttga |
473 |
Q |
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| T |
41133607 |
taccacattgttgttattcctttttctgcaaatacttttaacatttttctttttga |
41133552 |
T |
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