View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_13 (Length: 478)
Name: NF14614_low_13
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 207 - 462
Target Start/End: Complemental strand, 29622796 - 29622541
Alignment:
| Q |
207 |
taggagaaacttcatcatagaattgtaaaatgaacttaatgtccttgcttcagtaggaattctaccattttttctttgaggcatttaccacatggcattt |
306 |
Q |
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| T |
29622796 |
taggagaaacttcatcatagaattgtaaaatgaacttaatgtccttgcttcagtaggaattctaccattttttctttgaggcatttaccacatagcattt |
29622697 |
T |
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| Q |
307 |
tcgaggcagagggttcaaacaacttatctacttagactgcactaaaatgccaaatggccatggaaaaatattatggaatgcaatttgaatttataaactt |
406 |
Q |
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| T |
29622696 |
tcgaggcagagggttcaaacaacatatctacttaggctgcactaaaatgccaaatggccatggaaaaatattatggaatgcaatttgaatttataaactt |
29622597 |
T |
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| Q |
407 |
ccagtgctgacatagcactgcttaatgcttataagtaaagtaatcattgacattga |
462 |
Q |
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| T |
29622596 |
ccagtgctgacatagcactgcttaatgcttataagtaaagtaatcattgacattga |
29622541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 29622995 - 29622833
Alignment:
| Q |
8 |
atatacttaggcaatctggtaacacgatactgcatcctggctatatgaggacggaccacctcagtgatagtctcatcgtcaaactttagtatgttaagga |
107 |
Q |
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| T |
29622995 |
atatacttaggcaatctggtaacacgatactgcatcctggctatatgaggacggaccacctcagtgatagtctcaccgtcaaactttagtatgttaagga |
29622896 |
T |
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| Q |
108 |
gtggaacctagaagccaaaccttatcagcaagcaagagagagatacataaaacctcaatatgc |
170 |
Q |
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| T |
29622895 |
gtggaacctagaagccaaaccttatcagcaagcaagagagagatacataaaacctcaatatgc |
29622833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 29661937 - 29661772
Alignment:
| Q |
8 |
atatacttaggcaatctggtaacacgatactgcatcctggctatatgaggacggaccacctcagtgatagtctcatcgtcaaa---ctttagtatgttaa |
104 |
Q |
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| T |
29661937 |
atatacttaggcaatctggtaacacgatactgcatccttgctatatgaggacggaccacctcagtgatagtctcaccgtcaaacttctttagtatgttaa |
29661838 |
T |
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| Q |
105 |
ggagtggaacctagaagccaaaccttatcagcaagcaagagagagatacataaaacctcaatatgc |
170 |
Q |
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| T |
29661837 |
agagtggaacctagaaaccaaaccttatcagcaagcaagagagagatatgtaaaacaccaatatgc |
29661772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 279 - 416
Target Start/End: Complemental strand, 29661434 - 29661298
Alignment:
| Q |
279 |
tctttgaggcatttaccacatggcattttcgaggcagagggttcaaacaacttatctacttagactgcactaaaatgccaaatggccatggaaaaatatt |
378 |
Q |
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||||||| ||||||||| |||||| ||||||||||| |||||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29661434 |
tctttgaagcatttacctcatggcgttttcgaggcacagggttcaaacatcata-ctacttagactgcactaaaatgtcaaatggccatggaaaaatatt |
29661336 |
T |
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| Q |
379 |
atggaatgcaatttgaatttataaacttccagtgctga |
416 |
Q |
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| T |
29661335 |
acggattgcaatttgaatttataaactcccagtactga |
29661298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 29661736 - 29661684
Alignment:
| Q |
207 |
taggagaaacttcatcatagaattgtaaaatgaacttaatgtccttgcttcag |
259 |
Q |
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|||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
29661736 |
taggaggaacttcatcataaaattgtaaaatgaacataatgtccttgcttcag |
29661684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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