View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_14 (Length: 478)
Name: NF14614_low_14
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 27873999 - 27873656
Alignment:
| Q |
11 |
agaatataattagttatgaagtctttatgatatatttattggtaaggggcggtggagcaatctgatcaaaatggcgtcattgatgccatattttcattaa |
110 |
Q |
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| T |
27873999 |
agaatataattagttatgaagtctttatgatatatttatgggtaaggggcggtggagcaatctgatcaaaatggcgtcatggatgccatattttcattaa |
27873900 |
T |
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| Q |
111 |
cttagatatnnnnnnnnnnnnntagaagactttaaattcagactttatgataaatttatgagacataaatacagagtacataggaacgaaaactcgagta |
210 |
Q |
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| T |
27873899 |
tatagatataaaaaaaaaa---tggaagactttaaattcagactttatgataaatttatgagacataaatacagagtacatgggaacgaaaactcgagta |
27873803 |
T |
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| Q |
211 |
actgcagacctgctgttacattaaaatgcaaaagtttaacacacataaccatacaaattgaattctaactttgttctataaatttgataaagaataagag |
310 |
Q |
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| T |
27873802 |
actgcagacctgctgttacattaaaatgcaaaagtttaacacacataaccatacaaattgaattctaactttgttctataaatttgataaagaataagag |
27873703 |
T |
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| Q |
311 |
attaaaaaattcctaaacaaattgaattttaaatttgttttatttgc |
357 |
Q |
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| T |
27873702 |
attaaaaaattcctaaacaaattgaattttaaatttgttttatttgc |
27873656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Complemental strand, 27873639 - 27873608
Alignment:
| Q |
376 |
tccttcaattaccatgtttctcttcaaccaat |
407 |
Q |
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| T |
27873639 |
tccttcaattaccatgtttctcttcaaccaat |
27873608 |
T |
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