View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14614_low_19 (Length: 451)
Name: NF14614_low_19
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 19338869 - 19338439
Alignment:
| Q |
8 |
aatataagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgtt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338869 |
aatataagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgtt |
19338770 |
T |
|
| Q |
108 |
ccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgattccaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338769 |
ccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatctcactataatccccaaatagcaatgcgtagaggtagagggccgattccaaa |
19338670 |
T |
|
| Q |
208 |
aaccacgatgacagctgtttggaatctattttatacataatacaataattatgactatcaagttcatattaaacaacaataaaacgttaacgattacaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338669 |
aaccacgatgacagctgtttggaatctattttatacataatacaataattatgactatcaagttcatattaaacaacaataaaacgttaacgattacaaa |
19338570 |
T |
|
| Q |
308 |
caaaacacataagtaaatatccc-nnnnnnnccaaacataaacaagtttaagcatctgaaggcttgaagtaagtttctggatattaaaactgatcttttg |
406 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338569 |
caaaacacataagtaaatatcccaaaaaaaaccaaacataaacaagtttaagcatctgaaggcttgaagtaagtttctggatattaaaactgatcttttg |
19338470 |
T |
|
| Q |
407 |
ttctcctaaaatgcctaaaaaatcataatat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19338469 |
ttctcctaaaatgcctaaaaaatcataatat |
19338439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 13 - 157
Target Start/End: Complemental strand, 18010699 - 18010555
Alignment:
| Q |
13 |
aagttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgatcaagaaacaagttttcttaaaactcatctagatgttccatc |
112 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18010699 |
aagttttaaaattttgtcttgaattgaccataattgattgattcaagtgacagtgtgatcgagaaacaagttttcttaaatctcatctagatgttccatc |
18010600 |
T |
|
| Q |
113 |
cttgaattgaacttcacattaaccttcaagttaaaaacaaaatct |
157 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18010599 |
cttgaattgaacttaacattaaccttcaagttaaaaacaaaatct |
18010555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 19417526 - 19417470
Alignment:
| Q |
15 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat |
71 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19417526 |
gttttaaaattttgtcctgaagtgaccataattgattgattcaagtgacagtgtgat |
19417470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 18019248 - 18019202
Alignment:
| Q |
15 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtg |
61 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
18019248 |
gttttaaaattttgtcttgaagtgaccataattgattgattcaagtg |
18019202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 19323797 - 19323716
Alignment:
| Q |
76 |
aaacaagttttcttaaaactcatctagatgttccatccttgaattgaacttcacattaaccttcaagttaaaaacaaaatct |
157 |
Q |
| |
|
|||| ||||||| |||| | |||||| ||||||||||||||||||||||| |||| |||| |||| || |||||||||||| |
|
|
| T |
19323797 |
aaaccagttttcgtaaatcccatctatatgttccatccttgaattgaactaaacatgaaccatcaacttcaaaacaaaatct |
19323716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 19379511 - 19379465
Alignment:
| Q |
15 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtg |
61 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
19379511 |
gttttaaaattttgtcttgaagtgaccataattgaatgattcaagtg |
19379465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 17947840 - 17947784
Alignment:
| Q |
15 |
gttttaaaattttgtcttcaagtaaccataattgattgattcaagtgacagtgtgat |
71 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
17947840 |
gttttaaaattttgtcttgaagtgaccattatttgttgattcaagtggcagcgtgat |
17947784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University