View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_24 (Length: 400)
Name: NF14614_low_24
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 5281246 - 5281607
Alignment:
| Q |
20 |
atatcattatcaacgcacaatatcaaattaaagaccaacaatttgtatttaaccttttttggagaagttaaagaactcacaatcaaacacatagtttttt |
119 |
Q |
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| T |
5281246 |
atatcattatcaacgcacaatatcaaattaaagaccaacaatttatatttaaccttttttggagaagttaaagaactcacaatcgaacgcatagtttttt |
5281345 |
T |
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| Q |
120 |
ccttagtgtaattgcttgcnnnnnnnntaaaatatcatca---ttgatagttatcagtcgaatcgactaactttcaaattcaacgacaactttcaaatca |
216 |
Q |
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| T |
5281346 |
ccttagtgtaattgcttgc-aaaaaaataaaatatcatcattgttgagagttatcagtcgaatcgactaacttttaaattcaacaacaactttcatatca |
5281444 |
T |
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| Q |
217 |
aagtacttgaaagcccaacttagtttgaccacccaattcaacttaaggagtacactataggtaaaaatcaaagtctatctagttatgaaaaattactttc |
316 |
Q |
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| T |
5281445 |
aagtacttgaaagcccaacttaatttgaccacccaattcaacttaag------------agtaaaaatcaaagtctatctaattatgaaaaattactttc |
5281532 |
T |
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| Q |
317 |
tctaaacatactttaccaacttcaaacgaagtatgtattcgatggttcccacatatgcataatggaaagaataat |
391 |
Q |
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| T |
5281533 |
tctaaacatactttaccaacttcaaaccaagtatgcatttgatggttcccacatatgcataacggaaagaataat |
5281607 |
T |
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