View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_25 (Length: 396)
Name: NF14614_low_25
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 32029545 - 32029172
Alignment:
| Q |
17 |
atatatagtagaatcagtttcctgtggcagaataccaaagtaatgcttccaaacagaatcctctcttgacctttctcttataagaaacagcataacagac |
116 |
Q |
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| T |
32029545 |
atatatagtagaatcagtttcctgtggcagaataccaaagtaatgcttccaaacagaatcctctcttgacctttctcttataagaaacagcataacagac |
32029446 |
T |
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| Q |
117 |
aaccatggcgtcaacttactacacaccctccctatctctgaagatgcaactgcatcaggatttatccacaacctcttaggtacctgcaaaataacatcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029445 |
aaccatggcgtcaacttactacacaccctccctatctctgaagatgcaactgcatcaggatttatccacaacctcttaggtacctgcaaaataacatcat |
32029346 |
T |
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| Q |
217 |
tcctagaaatatctttgagtgcaaccaatcctaaaccttctggtaccacactagctttcactggtgtcttggcagtgataacaccttcttcttgaagcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029345 |
tcctagaaatatctttgagtgcaaccaatcctaaaccttctggtaccacactagctttcactggtgtcttggcagtgataacaccttcttcttgaagcca |
32029246 |
T |
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| Q |
317 |
cttccagaaggtttgaactgctggagacactgatgcttcagttccaagagaagctactgatttgacagagaaag |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029245 |
cttccagaaggtttgaactgctggagacactgatgcttcagttccaagagaagctactgatttgacagagaaag |
32029172 |
T |
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