View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_27 (Length: 383)
Name: NF14614_low_27
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 35850833 - 35851203
Alignment:
| Q |
1 |
ttcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatccaattcattcttccgtcgaatcaaatcatcgtca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35850833 |
ttcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatccaattcattcttccgtcgaatcaaatcgtcgtca |
35850932 |
T |
|
| Q |
101 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850933 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaac |
35851032 |
T |
|
| Q |
201 |
tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851033 |
tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtttc |
35851132 |
T |
|
| Q |
301 |
tttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatg |
371 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35851133 |
tttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatg |
35851203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 356
Target Start/End: Original strand, 35841217 - 35841568
Alignment:
| Q |
2 |
tcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatccaattcattcttccgtcgaatcaaatcatcgtcaa |
101 |
Q |
| |
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||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| | |
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| T |
35841217 |
tcctcttgatcttccgcattcaattctctagattcttcaataatcttattcaacaacgattgttccaattcattctttcttcgaatcaaatcatcgtcga |
35841316 |
T |
|
| Q |
102 |
aatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaact |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || || |||||||| |||||||||| ||||| |
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| T |
35841317 |
aatcgcaatcctcaatgagaattctacgaatagcgctactatccaaatcctcaaaaacaccgttctcatactccactctgtaaaaaccgatttcataact |
35841416 |
T |
|
| Q |
202 |
caaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattcaacggttacagtttct |
301 |
Q |
| |
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|| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35841417 |
cataacttttccgatttg---aacggtttctgaaaactctttcaaaacacatcgtccaatcaatacaatcggcttcttcaattcaacggttacagtttct |
35841513 |
T |
|
| Q |
302 |
ttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacg |
356 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
35841514 |
ttcccttttcttctcggtttccgcggtcgacctctccgttttggtggttccgacg |
35841568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 56 - 371
Target Start/End: Complemental strand, 13314307 - 13313992
Alignment:
| Q |
56 |
aacgattgatccaattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaa |
155 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| | ||||||| ||||||||| ||||||||| || ||||| || |||||||||| ||||||| |
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| T |
13314307 |
aacgattgatccaattcattctttcgtcgaattaaatcttaatcaaaattgcaatcctcgatgagaattataggaataacattactatccaattcctcaa |
13314208 |
T |
|
| Q |
156 |
aatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcg |
255 |
Q |
| |
|
|| || | ||||| | ||||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| |
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| T |
13314207 |
aaacatcattctcaaactcgactctgtataaaccaattttataaatcaaaactttttcgatttggacaacgctttttgaaaactctttcaaaatctatcg |
13314108 |
T |
|
| Q |
256 |
tccaatcaatacaataggcttcttcaattcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgac |
355 |
Q |
| |
|
||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||| ||| |
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| T |
13314107 |
tccaatcaacacaatcggcttcttcatttcaacggttacagtttctttctcttttcttctttatttccgcggtcgacctctccttttcggtggttctgac |
13314008 |
T |
|
| Q |
356 |
ggaggatcccctgatg |
371 |
Q |
| |
|
||||||||||| |||| |
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| T |
13314007 |
ggaggatcccccgatg |
13313992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 82 - 371
Target Start/End: Original strand, 13313413 - 13313702
Alignment:
| Q |
82 |
tcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctg |
181 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||||||||||| ||| || |||||||||| | ||||||| ||| |||||| | ||||||||| |
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|
| T |
13313413 |
tcgaatcaaatcatagtcaaaattgcaatccttgatgagaattctacggataacaatactatccaatttctcaaaaacactgttctcaaactcgactctg |
13313512 |
T |
|
| Q |
182 |
tataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttca |
281 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
13313513 |
tataaaccgattttatgactcacaacttttccaatttgaacaacgaattctgaaaactctttcaaaacgtatcgtccaatcaatacaatcggcttattca |
13313612 |
T |
|
| Q |
282 |
attcaacggttacagtttctttctcttttcttctctgtttccgcggtcgacctctccgtttaggtggttccgacggaggatcccctgatg |
371 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||| ||| |||| ||| | || || |||| |||||||||| |||| |
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| T |
13313613 |
tttcaacggttccagtttctttctcttttcttctctgcttccgcggtcaaccactccttttcgatgatttcgacagaggatcccccgatg |
13313702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 13300924 - 13301051
Alignment:
| Q |
142 |
atccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactct |
241 |
Q |
| |
|
|||||| ||||||||| |||||||||| | |||||| |||||||| ||||||||||||||| |||||||| ||||||| ||| || |||| |||||||| |
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|
| T |
13300924 |
atccaattcctcaaaaacaccgttctcaaactcgactttgtataaatcgattttgtaactcataacttttctgatttgaacaatgctttct-aaaactct |
13301022 |
T |
|
| Q |
242 |
ttcaaaacgtatcgtccaatcaatacaat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13301023 |
ttcaaaacgtatcgtccaatcaatacaat |
13301051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 178 - 275
Target Start/End: Complemental strand, 13305675 - 13305578
Alignment:
| Q |
178 |
tctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggct |
275 |
Q |
| |
|
||||| |||||||||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |
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|
| T |
13305675 |
tctgtgtaaaccgattttataactcacaacttttctgatttgaacaacgctttctgaaaactctttcaaaacatatcggccaatcaatacaatcggct |
13305578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 13305377 - 13305536
Alignment:
| Q |
101 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaac |
200 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| | || ||||| ||||||| ||||| |||| |
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|
| T |
13305377 |
aaattgcaatcctc--tgagaattctacgaatagcactactatcaatttcctcaaaaacaccgttctcaaactc--ctctgcataaaccaattttataac |
13305472 |
T |
|
| Q |
201 |
tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaat |
270 |
Q |
| |
|
||| || ||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
13305473 |
tcataatttttccgatttga------ctttctgaaaactctttcaaaacacatcgtccaaccaatacaat |
13305536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 13305739 - 13305673
Alignment:
| Q |
101 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttct |
167 |
Q |
| |
|
|||| ||||| ||| |||| |||| ||||||| ||||||||||||| ||||||||| ||||||||| |
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|
| T |
13305739 |
aaattgcaatactcgatgataatttgacgaataacactactatccaattcctcaaaaacaccgttct |
13305673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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