View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_29 (Length: 373)
Name: NF14614_low_29
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 29737059 - 29736705
Alignment:
| Q |
17 |
caatctagtcttaaatcctagtaatgattgatgtcacattaagtactcctatattatattgagtnnnnnnngtttaattattgactgttacctttagcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29737059 |
caatctagtcttaaatcctagtaatgattgatgtcacattaagtactcctatattatattgagtaaaaaaagtttaattattgactgttacctttagcaa |
29736960 |
T |
|
| Q |
117 |
cagcattgactatctttttacggaaacattaaggaagaagtggaatnnnnnnnnnnnnnnnnnnnnnnntcatttcgtcatttagcactagcttctcatt |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29736959 |
catcattgactatctttttacggaaacattaaggaagaagtggaataaaaaataaaaccgtcaaaaaaaccatttcgtcatttagcactagcttctcatt |
29736860 |
T |
|
| Q |
217 |
cattcattcatttcattattcggtgacacaccttatctctctctct--gttctattcttctttaacttttcatttcacacaaaaagctaaatcaatacaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29736859 |
cattcattcatttcattattcggtgacacaccttatctctctctctctgttctattcttctttaacttttcatttcacacaaaaagctaaatcaatacaa |
29736760 |
T |
|
| Q |
315 |
ccaccactcactcttcccatcgaaatcaaatcaaccttacttttctattcatctc |
369 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29736759 |
ccaccactcactcttcccatctaaatcaaatcaaccttacttttctattcatctc |
29736705 |
T |
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