View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_3 (Length: 586)
Name: NF14614_low_3
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 151 - 474
Target Start/End: Original strand, 38625527 - 38625832
Alignment:
| Q |
151 |
aggtgattgtagaaaagtataccaaatgcgatctgcctcatttggagaagaaaaagtaagactataa-tcaaatttgagttagataagtaaatgcataaa |
249 |
Q |
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| T |
38625527 |
aggtgattgtagaaaagtataccaaatgcgatctgcctcatttggagaagaaaaagtaagactataaatcaaatttgagttagataaataaatgc----- |
38625621 |
T |
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| Q |
250 |
actttatgcataagttgtaattatcataacttacttagtaattttatcatttgttatatttttgtgatagatatcttgttccaagagacttgtcagttgg |
349 |
Q |
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| T |
38625622 |
---------ataagttgtaattat----agtaacttagtaattttat-atttgttatatttttgtgatagatatcttgttccaagagacttgtcagttgg |
38625707 |
T |
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| Q |
350 |
gcatttcattcatattttgagttccagacttaatttaccagctggaaaagctctctttgtatttgtcaagaatactttacctcaaactggtaataaactt |
449 |
Q |
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| T |
38625708 |
acatttcattcatattttgagttctagacttaatttaccagctggaaaagctctctttgtatttgtcaagaatactttacctcaaactggtaataaactt |
38625807 |
T |
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| Q |
450 |
gcattatcctaatcttaaatctatc |
474 |
Q |
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| T |
38625808 |
gcattatcctaatcttaaatctatc |
38625832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 38625387 - 38625456
Alignment:
| Q |
11 |
caaaggcttgaagaatcgcgtgatattattgccaaataccccgatcgaatccccgtaagtcccatcaatc |
80 |
Q |
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| T |
38625387 |
caaaggcttgaagaatcgcgtgatattattgccaaataccccgatcgaatccccgtaagtcccatcaatc |
38625456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 38625910 - 38625951
Alignment:
| Q |
529 |
cagctagtatgatggactctgtttatagatcattcaaggatg |
570 |
Q |
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| T |
38625910 |
cagctagtatgatggactctgtttatagatcattcaaggatg |
38625951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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