View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_34 (Length: 336)
Name: NF14614_low_34
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 52 - 318
Target Start/End: Complemental strand, 41981601 - 41981338
Alignment:
| Q |
52 |
catctttttcctctggtaactactactctaccgaatacttttgtatgttcggtatcaggtgagtttgtcgaaatatacgtaagtgactcatatcatcttg |
151 |
Q |
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| T |
41981601 |
catcttttccctttggtaactactactctaccgagtacttttgtatgttcgatatcaaatgagtttatcgaaatatacgtaagtgagtcataccatcttg |
41981502 |
T |
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| Q |
152 |
caaaagatacaaaatgaacttttgcaaaatgaaattccacaccaactcatcgtaatttcgacaaacttatcgaagaaacacnnnnnnnnnnnaaattact |
251 |
Q |
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| T |
41981501 |
caaaa-atacaaaatgaacttttgcaaaatgaaattcgacaccaactcatcgtaatttcgacaaacttatcaaagaaaca--tttttttttttaattact |
41981405 |
T |
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| Q |
252 |
attaactatttccattcaaaatattttcaggtaacttgtcctcataccacattaactgcggcacttc |
318 |
Q |
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| T |
41981404 |
attaactatttccattcaaaatattttcaggtaacttgtcctcataccacattaactgcggcacttc |
41981338 |
T |
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