View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_36 (Length: 327)
Name: NF14614_low_36
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 24 - 321
Target Start/End: Original strand, 28113899 - 28114192
Alignment:
| Q |
24 |
gataatcagatattttgaatgagtttgaaggaggaggtacgagttcaataatcggaaactaacataactaaccacctgctaattgttaacatttacctat |
123 |
Q |
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| T |
28113899 |
gataatcagatactttgaatgagttcgaaggaggaggtacaagttcaatcatcggaaactaac----gtaaccaccggctaattgttaacatttacctat |
28113994 |
T |
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| Q |
124 |
aaagaaacaaaatcagacaatttgtcctagggtttgacctagattatattgaaccagttcttactatttatttgttatctacttcactcataattgaacc |
223 |
Q |
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| T |
28113995 |
aaagaaacaaaatcagagaatttgtcctagggtttgacctagattatattgaaccagttcttactatttatttgttatctacttcactcataattgaacc |
28114094 |
T |
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| Q |
224 |
agatgaataagttgaactatgattcatgatatgaataatttccttgttaaaagatgatatgaataatttcttgaagcatcaccaaccattttcctttg |
321 |
Q |
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| T |
28114095 |
agatgaataagttgaactatgattcatgatatgaataatttccttgttaaaaaatgatatgaataatttcttgaagtatcaccaaccattttcctttg |
28114192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 28113726 - 28113791
Alignment:
| Q |
26 |
taatcagatattttgaatgagtttgaaggaggaggt-acgagttcaataatcggaaactaacataa |
90 |
Q |
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|||| |||||||||||| ||||| |||||||||||| | ||||||||| ||| ||||||||||||| |
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| T |
28113726 |
taattagatattttgaaggagttcgaaggaggaggtcatgagttcaatcatcagaaactaacataa |
28113791 |
T |
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