View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_39 (Length: 320)
Name: NF14614_low_39
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 304
Target Start/End: Original strand, 35405698 - 35405996
Alignment:
| Q |
4 |
agaaaataaatgggacaagtaagtctaaaaattagatttatgaagtattaatgacgaagtgtatggtggcagatgcaacattgaagaagtgcaataaaag |
103 |
Q |
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| T |
35405698 |
agaaaataaatgggacaagtaagtctaaaaattagatttatgaagtattaatgacgaagtgtatggtggcagatgcaacattgaagaagtgcaataaaag |
35405797 |
T |
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| Q |
104 |
gagcattgtttcagttgggtaggtctaccttttcataatggaatgctttcaataagtttttcaacttactcatttgaacccacccttcttctctcttatt |
203 |
Q |
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| T |
35405798 |
gagcattgtttcagttgggtaggtctaccttttcataatggaatcctttcaataag--tttcaacttactcatttgaacccacccttcttctctcttatt |
35405895 |
T |
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| Q |
204 |
attcctcacacaaattttccctttgttcaatcccaaacaaagccaaaaattaaatcgttcaaactgcatgtagcagcacttcatcaataatatcatgcac |
303 |
Q |
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| T |
35405896 |
attcctcacacaaattttccctttgttcaatcccaaacaaagccaaaaattaaatcgttcaaactgcatgcagcagcacttcatcaataatatcatgcac |
35405995 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 48021045 - 48020980
Alignment:
| Q |
62 |
gtgtatggtggcagatgcaacattgaagaagtgcaataaaaggagcattg-tttcagttgggtaggt |
127 |
Q |
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| T |
48021045 |
gtgtatggtggcagatgc-acattgaaggagtgcaataaaaaggggattgttttcagttgggtaggt |
48020980 |
T |
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