View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_51 (Length: 285)
Name: NF14614_low_51
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30725311 - 30725043
Alignment:
| Q |
1 |
tttcttatagtaatatatcttaattgccgagtacatagcacaaaaacataaacacaaacttggtactaatttactaacttaacttatctttggcctaaag |
100 |
Q |
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| T |
30725311 |
tttcttatagtaatatatcttaattgccgagtacatagcacaaaaacataaacacaaacttggtactaatttactaacttaacttatctttggcctatag |
30725212 |
T |
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| Q |
101 |
atatagtcgtcattagcagacaattacttgcaggtacaaaattacaccaaaacatcacataatgtgaacaaaagaaactatgtagacctgaaccacttgc |
200 |
Q |
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| T |
30725211 |
atatagtcgtcattagcagacaattacttgcaggtacaaaattacaccaaaacatcacataatgtgaacaaaagaaactatgtagacctgaaccacttgc |
30725112 |
T |
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| Q |
201 |
tattgtagacatgtacttggttcttcaatctaacgataataatcatatgagtacaaattatcatcaagt |
269 |
Q |
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| T |
30725111 |
tattgtagacatgtacttggttcttcaatctaacgataataatcatatgagtacaaattatcatcaagt |
30725043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 30711162 - 30711044
Alignment:
| Q |
40 |
acaaaaacataaacacaaacttggtactaatttactaacttaacttatc-tttggcctaaagatatagtcgtcattagcagacaattacttgcaggtaca |
138 |
Q |
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||||||| ||| ||||||||||||||||||||| |||||| |||||||| ||| ||| ||||||||||| ||||| ||| ||||| |||||||||| || |
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| T |
30711162 |
acaaaaatatagacacaaacttggtactaattttctaactcaacttatcttttagccaaaagatatagtgatcattggcacacaatgacttgcaggtgca |
30711063 |
T |
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| Q |
139 |
aaattacaccaaaacatca |
157 |
Q |
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| T |
30711062 |
aaattacaccataacatca |
30711044 |
T |
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