View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14614_low_54 (Length: 276)
Name: NF14614_low_54
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_54 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 52421201 - 52421461
Alignment:
| Q |
16 |
aaaagcttatttatttgcgtaagcttaaaataaaccaatacaaacgggtcttatatatcattgtgactaataacttctacaaataccaaatactttttta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52421201 |
aaaagcttatttatttgcgtaagcttaaaataagccaatacaaacgggtcttatatatcattgtgactaataacttctacaaataccaaatactttttta |
52421300 |
T |
|
| Q |
116 |
ttttcatattaacttggctttctaccagtgtgtttgcttggtagacgagttgggtaacagaacaatgcggccctgtctctcgaatgctgtcaaagttcag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52421301 |
ttttcatattaacttggctttctaccagtgtgtttgcttggtagacgagttgggtaacagaacaatgcggccctgtctctcgaatgctgtcaaagttcag |
52421400 |
T |
|
| Q |
216 |
gtattgtttcatctcaagttccctttatggttaggttaaggttcaatttttatcaagtttt |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52421401 |
gtattgtttcatctcaagttccctttatggttaggttaaggttcaatttttatcaagtttt |
52421461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 34633507 - 34633536
Alignment:
| Q |
16 |
aaaagcttatttatttgcgtaagcttaaaa |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34633507 |
aaaagcttatttatttgcgtaagcttaaaa |
34633536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 28357258 - 28357306
Alignment:
| Q |
16 |
aaaagcttatttatttgcgtaagct-taaaataaaccaatacaaacggg |
63 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||||||| |
|
|
| T |
28357258 |
aaaagcttatttatttgcataagctaaaaaataagccaatacaaacggg |
28357306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 1005366 - 1005318
Alignment:
| Q |
16 |
aaaagcttatttatttgcgtaagctt-aaaataaaccaatacaaacggg |
63 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||| ||||| |||||||| |
|
|
| T |
1005366 |
aaaagcttatttatttgcataagcttaaaaataagccaattcaaacggg |
1005318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University