View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_6 (Length: 538)
Name: NF14614_low_6
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 54030818 - 54031077
Alignment:
| Q |
18 |
actagaagcttctctttacctatatacagacaaatatgtacaaagtgtgttgtcaattttatccttccat-tgataccaactaatctccgcgtaaaacct |
116 |
Q |
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| T |
54030818 |
actagaagcttctctttacctatatacagacaaatatgtacaaagtgtgttgtcaattttatccttccacatgataccaactaatctccgcgtaaaacct |
54030917 |
T |
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| Q |
117 |
tgtctggctaattgtaagatgcatgtggtacgtaaaaatatatcttagatttcaatcaacaatttatgtatttggttaataatgcggattagatacatct |
216 |
Q |
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| T |
54030918 |
tgtctggctaattctaagatgcatgtggtacgaaaaaatatatcttagatt-caatgaacaattcatgtatttggttaataatgcggattagatacatct |
54031016 |
T |
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| Q |
217 |
gttgtttaataaatctaaaaaatatgttttggttcacaataattatgagaaggtgtacgag |
277 |
Q |
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| T |
54031017 |
gttgtttaataaatctaaaaaatatgttttggtttataataattatcaaaaggtgtacgag |
54031077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 368 - 527
Target Start/End: Original strand, 54031168 - 54031327
Alignment:
| Q |
368 |
actctaaagtatcaaagaattttctctcctaaagcctatagccaccattgtatttgtacaaagaaaataaaaatatgcaaatgaaaaacaagcatttgat |
467 |
Q |
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| T |
54031168 |
actctaaagtatcaaagaattctctctcctaaagcctatagccaccattgtatttgtacaaagaaaataaaaatatgcaaatgaaaaacaagcatttgat |
54031267 |
T |
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| Q |
468 |
tatattttaacgagcatgcataccttgcttctatggtcagaggttggtcgtataattcat |
527 |
Q |
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| T |
54031268 |
tatattttaacgagcatgcataccttgcttctatggtcagaggttggtcgtataattcat |
54031327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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