View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14614_low_63 (Length: 243)
Name: NF14614_low_63
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14614_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 646941 - 647152
Alignment:
| Q |
18 |
ttttccatccattaggctcaaacttaatactttgcttaaggtatcgagtccaattggacaaatgttatgttggtaaacgacttggagtatttgatactta |
117 |
Q |
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| T |
646941 |
ttttccatccactaggctcaaacttaatactttgcttaaggtatcgagtccagttggacaaatgttatgttggtaaacgacttggagtatttgatactta |
647040 |
T |
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| Q |
118 |
ttttagaaattcattaggtaaattgaattcttaaataagaggagggaaaatgaaattggaattttctcttagcaattgaacgttgtgattttgatactat |
217 |
Q |
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| T |
647041 |
ttttagaaattcattaggtaaattgaattcttaaataagaggagggaaaatgaaattggaattttctcttagcaattgaacgttgtgattttgatactat |
647140 |
T |
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| Q |
218 |
taatgttcatct |
229 |
Q |
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| T |
647141 |
taatgttcatct |
647152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 684444 - 684502
Alignment:
| Q |
115 |
ttattttagaaattcattaggtaaattgaattcttaaataagaggagggaaaatgaaat |
173 |
Q |
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| T |
684444 |
ttattttagaaatttacgagggaaaatgaattcttaaataagaggaggtaaaataaaat |
684502 |
T |
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