View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14614_low_64 (Length: 236)

Name: NF14614_low_64
Description: NF14614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14614_low_64
NF14614_low_64
[»] chr6 (14 HSPs)
chr6 (117-188)||(34395419-34395490)
chr6 (1-75)||(34395303-34395377)
chr6 (119-181)||(21060468-21060529)
chr6 (119-181)||(21079785-21079846)
chr6 (127-181)||(19594048-19594102)
chr6 (121-189)||(2980634-2980703)
chr6 (120-181)||(19246248-19246308)
chr6 (187-220)||(34396428-34396461)
chr6 (126-181)||(31878924-31878979)
chr6 (120-181)||(22564614-22564674)
chr6 (128-181)||(23644390-23644442)
chr6 (120-181)||(24389212-24389272)
chr6 (129-181)||(9507344-9507395)
chr6 (117-181)||(10505118-10505181)
[»] chr1 (8 HSPs)
chr1 (117-189)||(27912026-27912099)
chr1 (123-185)||(20033185-20033247)
chr1 (117-189)||(26581536-26581609)
chr1 (120-179)||(16363597-16363655)
chr1 (120-188)||(24901172-24901241)
chr1 (124-188)||(17016900-17016965)
chr1 (120-181)||(25402500-25402560)
chr1 (129-181)||(14235358-14235409)
[»] chr4 (15 HSPs)
chr4 (123-189)||(19538951-19539017)
chr4 (123-185)||(19667016-19667078)
chr4 (127-183)||(11241067-11241123)
chr4 (123-189)||(25117933-25118001)
chr4 (121-187)||(7613701-7613768)
chr4 (127-181)||(7583764-7583817)
chr4 (123-181)||(17434406-17434463)
chr4 (117-189)||(22217056-22217127)
chr4 (126-181)||(5691728-5691782)
chr4 (117-167)||(17661940-17661990)
chr4 (117-167)||(21166544-21166594)
chr4 (125-178)||(26047214-26047267)
chr4 (125-178)||(26052395-26052448)
chr4 (125-157)||(9739989-9740021)
chr4 (129-181)||(19883586-19883637)
[»] chr7 (15 HSPs)
chr7 (117-181)||(2506871-2506935)
chr7 (117-181)||(24194389-24194453)
chr7 (120-181)||(6018330-6018390)
chr7 (126-180)||(21502827-21502880)
chr7 (120-181)||(1589211-1589271)
chr7 (121-181)||(9767757-9767816)
chr7 (120-179)||(1586165-1586223)
chr7 (123-181)||(5221036-5221093)
chr7 (127-181)||(8977542-8977595)
chr7 (120-181)||(10418529-10418589)
chr7 (117-146)||(13281789-13281818)
chr7 (117-146)||(17974314-17974343)
chr7 (117-189)||(2455306-2455378)
chr7 (117-181)||(5046898-5046961)
chr7 (117-145)||(17981080-17981108)
[»] chr8 (10 HSPs)
chr8 (117-180)||(24851006-24851068)
chr8 (120-181)||(6886640-6886700)
chr8 (117-189)||(18836755-18836828)
chr8 (117-181)||(13833665-13833728)
chr8 (121-181)||(28904033-28904092)
chr8 (126-181)||(24380424-24380478)
chr8 (127-181)||(13313343-13313396)
chr8 (123-177)||(24750803-24750856)
chr8 (120-181)||(4007216-4007276)
chr8 (117-181)||(14077094-14077157)
[»] chr5 (9 HSPs)
chr5 (117-187)||(28280247-28280318)
chr5 (126-181)||(26069221-26069275)
chr5 (131-189)||(20532597-20532655)
chr5 (120-181)||(18832194-18832254)
chr5 (120-181)||(19006913-19006973)
chr5 (126-183)||(26315155-26315211)
chr5 (117-157)||(107722-107762)
chr5 (117-181)||(26253464-26253527)
chr5 (129-181)||(29987928-29987979)
[»] chr3 (10 HSPs)
chr3 (126-181)||(18535742-18535796)
chr3 (123-189)||(3003019-3003088)
chr3 (120-181)||(22246969-22247029)
chr3 (123-170)||(26092888-26092935)
chr3 (117-188)||(7805705-7805777)
chr3 (127-181)||(13906655-13906708)
chr3 (127-181)||(18457183-18457236)
chr3 (120-181)||(17135064-17135124)
chr3 (127-180)||(20431445-20431497)
chr3 (128-188)||(16242266-16242325)
[»] chr2 (6 HSPs)
chr2 (125-183)||(16157154-16157211)
chr2 (117-181)||(8501572-8501635)
chr2 (127-181)||(17350950-17351003)
chr2 (128-181)||(18545244-18545296)
chr2 (123-183)||(18970841-18970900)
chr2 (117-181)||(32141453-32141516)
[»] scaffold0024 (1 HSPs)
scaffold0024 (120-181)||(41311-41371)
[»] scaffold0043 (1 HSPs)
scaffold0043 (121-181)||(88502-88561)
[»] scaffold0451 (1 HSPs)
scaffold0451 (120-181)||(10158-10218)
[»] scaffold0330 (1 HSPs)
scaffold0330 (8-56)||(813-861)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 34395419 - 34395490
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtc 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34395419 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtc 34395490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 34395303 - 34395377
Alignment:
Q  1 ccccacacgaagggacacacgctgcacatgagtgctagaaacatagattttgttcttcatgacatgccatcttac 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34395303 ccccacacgaagggacacacgctgcacatgagtgctagaaacatagattttgttcttcatgatatgccatcttac 34395377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 21060468 - 21060529
Alignment:
Q  119 ccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||||| || ||||||||||    
T  21060468 ccaaaatagaggagtattagatcaattgcatatgatttt-tggacatttttaatgttttctat 21060529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 21079785 - 21079846
Alignment:
Q  119 ccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||| | ||||||||||    
T  21079785 ccaaaatagaggagtattagatcaattgcatatgatttt-tggacatttgcaatgttttctat 21079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 19594048 - 19594102
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| |||||||||  |||| |||||| ||||||||||    
T  19594048 gaggagtattagaacaattgcctatgattttacggacttttgtaatgttttctat 19594102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 2980634 - 2980703
Alignment:
Q  121 aaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagtca 189  Q
    |||||||| ||||||||||||||||||||||| ||||  ||| | |||||| |||||||| |||||||||    
T  2980634 aaaatagatgagtattagaacaattgcatatgctttttgggatattttgtaatgttttctttttgagtca 2980703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 19246308 - 19246248
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||| |||||||||| ||||||| |||||||||  ||||||||||||| ||||||||    
T  19246308 caaaatagatgagtattagatcaattgcttatgattttg-ggacatttgtattattttctat 19246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 34396428 - 34396461
Alignment:
Q  187 tcaaatagcataaattaaagtcttgggttgatag 220  Q
    ||||||||||||||||||||||||||||||||||    
T  34396428 tcaaatagcataaattaaagtcttgggttgatag 34396461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 31878924 - 31878979
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||| ||||||| ||||||  |||||||||| ||||||||||| ||||||||||    
T  31878924 agaggaatattagatcaattgtctatgattttcgggacatttgtaatgttttctat 31878979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 22564614 - 22564674
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||||||||||| ||||||| | ||| |||| ||||||||||| ||||||||||    
T  22564614 caaaacagaggagtattagagcaattgcctgtga-tttcgggacatttgtaatgttttctat 22564674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 23644390 - 23644442
Alignment:
Q  128 aggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||    
T  23644390 aggagtattagatcaattgcctatga-tttcgggacatttgtaatgttttctat 23644442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 24389212 - 24389272
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||||||||||||||  |||||| ||||| |||| |||||||| |||||||||||||    
T  24389212 caaaacagaggagtattagattaattgcctatga-tttcgggacatttatattgttttctat 24389272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 9507344 - 9507395
Alignment:
Q  129 ggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||| ||||| |||| ||||||||||| | ||||||||    
T  9507344 ggagtattagaacaattgcttatga-tttcgggacatttgtaatattttctat 9507395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 10505181 - 10505118
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||| |||||||||||||| | |||| ||||| ||||||||||| |||| ||||||||||    
T  10505181 atccagaattgaggagtattagaatagttgcttatga-tttcaggacatatgtaatgttttctat 10505118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 27912099 - 27912026
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagtca 189  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| |||||| ||||| ||||||||||||    
T  27912099 atccaaaatagaggagtattagaacaattgtctatgattttcaggacattttgtaatgtttgctatttgagtca 27912026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 20033185 - 20033247
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttga 185  Q
    ||||||||||||||||||||||| | |||| ||||| | ||||||||| ||||||||| ||||    
T  20033185 aatagaggagtattagaacaattacctatggttttcggaacatttgtaatgttttctaattga 20033247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 26581609 - 26581536
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat-ttgagtca 189  Q
    ||||| ||| ||||||||||||||  ||||| |||| ||||| ||||||||||| |||||||||| ||||||||    
T  26581609 atccataatggaggagtattagaattattgcctatggttttcgggacatttgtaatgttttctatattgagtca 26581536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 16363655 - 16363597
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttct 179  Q
    |||||||||||||||||||| ||||||| ||||| |||| | ||||||||||| ||||||    
T  16363655 caaaatagaggagtattagatcaattgcctatga-tttcggaacatttgtattcttttct 16363597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 24901241 - 24901172
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttc--tatttgagtc 188  Q
    ||||| |||| ||||||||| ||||||| ||| |||| |||||||||||||||||||||  ||||||||||    
T  24901241 caaaacagagaagtattagatcaattgcttatcattt-caggacatttgtattgttttcaatatttgagtc 24901172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 17016900 - 17016965
Alignment:
Q  124 atagaggagtattagaacaattgcatatgattttcaggacattt-gtattgttttctatttgagtc 188  Q
    ||||||||||||||||||| |||| ||||  ||| |||  |||| |||||||||||||||||||||    
T  17016900 atagaggagtattagaacacttgcctatggcttttagggtattttgtattgttttctatttgagtc 17016965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 25402500 - 25402560
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||||||||||||| ||||  ||||| ||||||||| |||||| ||||||||||    
T  25402500 caaaaaagaggagtattagaacgattgtttatga-tttcaggacttttgtaatgttttctat 25402560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 14235358 - 14235409
Alignment:
Q  129 ggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||| ||||||| |||||||||  ||||||||||| ||||||||||    
T  14235358 ggagtattagaccaattgcttatgatttt-gggacatttgtaatgttttctat 14235409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 19538951 - 19539017
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtca 189  Q
    ||||||||||||||||||||||||| ||||||||    |||||||||| ||||||||||||||||||    
T  19538951 aatagaggagtattagaacaattgcctatgatttctgagacatttgtaatgttttctatttgagtca 19539017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 19667016 - 19667078
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttga 185  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||| ||||||||||||||    
T  19667016 aatagaggagtattagaacaattgcctatgatttctgggacatttgtaatgttttctatttga 19667078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 11241123 - 11241067
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctattt 183  Q
    ||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||    
T  11241123 gaggagtattagaacaattgtttatgatttttgggacatttgtaatgttttctattt 11241067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 25117933 - 25118001
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgt-attgttttctat-ttgagtca 189  Q
    ||||||||| ||||||||||||| | ||||||||||||||||||||| ||| |||||||| ||||||||    
T  25117933 aatagaggactattagaacaattacctatgattttcaggacatttgtaatttttttctatattgagtca 25118001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 7613768 - 7613701
Alignment:
Q  121 aaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagt 187  Q
    |||||||||||||||||||||||||||||||| | |||  || | |||||| ||||||||||||||||    
T  7613768 aaaatagaggagtattagaacaattgcatatggtcttcgagatattttgtaatgttttctatttgagt 7613701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 7583817 - 7583764
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||| ||||||||||    
T  7583817 gaggagtattagaacaattgcctatga-tttcaggacttttgtaatgttttctat 7583764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 17434463 - 17434406
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||    
T  17434463 aatagaggagtattagatcaattgcttatga-tttcgggacatttgtaatgttttctat 17434406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 22217056 - 22217127
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagtca 189  Q
    |||||||||| ||||| |||||||||||||| ||||| ||||| |||| |||||| ||||||||||||||||||    
T  22217056 atccaaaataaaggagcattagaacaattgcctatga-tttcatgacattttgta-tgttttctatttgagtca 22217127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 5691782 - 5691728
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||| ||||||  |||||||| ||| ||||||||||||||||||||    
T  5691782 agaggagtattagatcaattgtctatgattt-cagaacatttgtattgttttctat 5691728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 17661990 - 17661940
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacattt 167  Q
    |||||||||| ||||||||||||||||| || ||||||||||  |||||||    
T  17661990 atccaaaataaaggagtattagaacaatcgcctatgattttctcgacattt 17661940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 21166544 - 21166594
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacattt 167  Q
    ||||||| ||||||||| |||||| ||||||||||||||| || |||||||    
T  21166544 atccaaattagaggagttttagaaaaattgcatatgatttacatgacattt 21166594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 26047214 - 26047267
Alignment:
Q  125 tagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttc 178  Q
    ||||||||| ||||||||||||| |||||||||  ||| ||||||| |||||||    
T  26047214 tagaggagttttagaacaattgcctatgatttttgggatatttgtaatgttttc 26047267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 26052395 - 26052448
Alignment:
Q  125 tagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttc 178  Q
    ||||||||| ||||||||||||| |||||||||  ||| ||||||| |||||||    
T  26052395 tagaggagttttagaacaattgcctatgatttttgggatatttgtaatgttttc 26052448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 9739989 - 9740021
Alignment:
Q  125 tagaggagtattagaacaattgcatatgatttt 157  Q
    ||||||||| |||||||||||||||||||||||    
T  9739989 tagaggagttttagaacaattgcatatgatttt 9740021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 19883586 - 19883637
Alignment:
Q  129 ggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||    
T  19883586 ggagtattagaacaattgtctatga-tttcgggacatttgtaatgttttctat 19883637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 2506871 - 2506935
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||    
T  2506871 atccagaatcgaggagtattagaacaattgcttatgattttcgagacatttgtaatgttttctat 2506935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 24194453 - 24194389
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||||||||||||||||||||||||||| || |||| ||||||||| || ||||||||||    
T  24194453 atccagaatagaggagtattagaacaattgcatgtggtttttaggacatttataatgttttctat 24194389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 6018390 - 6018330
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||    
T  6018390 caaaacagaggagtattagattaattgcctatgatttt-aggacatttgtattgttttctat 6018330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 21502880 - 21502827
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttcta 180  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||    
T  21502880 agaggagtattagaacaattgcctatga-tttcgggacatttgtaatgttttcta 21502827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 1589271 - 1589211
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||| |||||||||||||||  |||||||||||| ||||| ||||||||||||||| |||||    
T  1589271 caaagtagaggagtattagattaattgcatatga-tttcaagacatttgtattgttgtctat 1589211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 9767816 - 9767757
Alignment:
Q  121 aaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||| ||||||| ||||| ||||  ||||||| |||||||||||||    
T  9767816 aaaatagaggagtattagatcaattgcctatga-tttcgagacatttatattgttttctat 9767757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 1586223 - 1586165
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttct 179  Q
    ||||||||||||| |||||| ||||||  |||||||| ||||||||||||| ||||||||    
T  1586223 caaaatagaggagcattagagcaattgtctatgattt-caggacatttgtaatgttttct 1586165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 5221036 - 5221093
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||| |||||||||||| ||||| |||| | ||||||||| ||||||||||    
T  5221036 aatagaggagtactagaacaattgcttatga-tttcggtacatttgtaatgttttctat 5221093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 8977542 - 8977595
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||| ||| ||||| ||||||||| |||||| ||||||||||    
T  8977542 gaggagtattagaacaactgcctatga-tttcaggacttttgtaatgttttctat 8977595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 10418589 - 10418529
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||||||||||| ||||||| ||||| |||| | ||||||||| ||||||||||    
T  10418589 caaaacagaggagtattagagcaattgcctatga-tttcggaacatttgtaatgttttctat 10418529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 13281789 - 13281818
Alignment:
Q  117 atccaaaatagaggagtattagaacaattg 146  Q
    ||||||||||||||||||||||||||||||    
T  13281789 atccaaaatagaggagtattagaacaattg 13281818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 17974343 - 17974314
Alignment:
Q  117 atccaaaatagaggagtattagaacaattg 146  Q
    ||||||||||||||||||||||||||||||    
T  17974343 atccaaaatagaggagtattagaacaattg 17974314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 2455378 - 2455306
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtca 189  Q
    |||||||||| | |||||||| ||||||| |  ||  ||||  ||||||||||| ||||||||||||||||||    
T  2455378 atccaaaataaatgagtattataacaatttcccatagtttttgggacatttgtaatgttttctatttgagtca 2455306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 5046898 - 5046961
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||||||||| |||||||| |||||| ||||| || | ||||||||||| ||||||||||    
T  5046898 atccagaatagaggattattagaataattgcttatgaatt-cgggacatttgtaatgttttctat 5046961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 17981108 - 17981080
Alignment:
Q  117 atccaaaatagaggagtattagaacaatt 145  Q
    |||||||||||||||||||||||||||||    
T  17981108 atccaaaatagaggagtattagaacaatt 17981080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 24851006 - 24851068
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttcta 180  Q
    ||||| ||||||||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||    
T  24851006 atccagaatagaggagtattataacaattgcttatga-tttcagaacatttgtaatgttttcta 24851068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 6886700 - 6886640
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||  |||||| ||||| |||| ||||||||||| ||||||||||    
T  6886700 caaaatagaggagtattagagtaattgcctatga-tttcgggacatttgtaatgttttctat 6886640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 18836828 - 18836755
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat-ttgagtca 189  Q
    ||||| |||| ||||||||||||||| |||  |||| ||||||||||||||||| ||||| |||| ||||||||    
T  18836828 atccataatataggagtattagaacatttgtttatggttttcaggacatttgtaatgtttactatattgagtca 18836755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 13833665 - 13833728
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||||| ||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||    
T  13833665 atccataatagtggagtattagagcaattgcttatga-tttcgggacatttgtaatgttttctat 13833728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 28904033 - 28904092
Alignment:
Q  121 aaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||  ||||| ||||| |||| ||||||||||| ||||||||||    
T  28904033 aaaatagaggagtattagaaacattgcttatga-tttcgggacatttgtaatgttttctat 28904092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 24380424 - 24380478
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||||||||||| ||||| |||| | |||||| |||||||||||||    
T  24380424 agaggagtattagaacaattgcctatga-tttcggaacatttctattgttttctat 24380478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 13313343 - 13313396
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| ||||| |||| |||| |||||| ||||||||||    
T  13313343 gaggagtattagaacaattgcctatga-tttcgggacttttgtaatgttttctat 13313396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 24750856 - 24750803
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgtttt 177  Q
    ||||||||||||||||||||||||  ||||| |||||||||| ||||| ||||||    
T  24750856 aatagaggagtattagaacaattgattatga-tttcaggacacttgtaatgtttt 24750803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 4007216 - 4007276
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||||||||| ||||||   |||||||| | ||| |||||||||||||||||    
T  4007216 caaaatagaggagtattagatcaattgtcaatgattttga-gacgtttgtattgttttctat 4007276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 14077157 - 14077094
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| || |||||||||||||| ||||||| |||||||||  ||||||||||| | ||||||||    
T  14077157 atccagaaaagaggagtattagatcaattgcttatgatttt-gggacatttgtaatattttctat 14077094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 28280318 - 28280247
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagt 187  Q
    ||||||||||||||||||||||||||||||  |||| ||||  ||||| |||||| |||||| |||||||||    
T  28280318 atccaaaatagaggagtattagaacaattgtctatggtttttgggacattttgtaatgttttatatttgagt 28280247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 26069275 - 26069221
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||||||||||| ||||| |||||| ||||||||| | ||||||||    
T  26069275 agaggagtattagaacaattgcttatga-tttcagaacatttgtaatattttctat 26069221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 20532597 - 20532655
Alignment:
Q  131 agtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtca 189  Q
    ||||||| ||||||||  |||| |||| ||||||||||||  |||||||||||||||||    
T  20532597 agtattataacaattgtctatggtttttaggacatttgtaacgttttctatttgagtca 20532655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 18832254 - 18832194
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||||||||||| ||||||  ||||| |||| ||||||||||| ||||||||||    
T  18832254 caaaacagaggagtattagagcaattgtctatga-tttcgggacatttgtaatgttttctat 18832194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 19006913 - 19006973
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||| ||||||||||||||| ||||| ||||| |||| |||| |||||| ||||||||||    
T  19006913 caaaatggaggagtattagaacgattgcctatga-tttcgggacttttgtaatgttttctat 19006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 26315211 - 26315155
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctattt 183  Q
    ||||||||||||||||  |||| ||||||||| | |||||||||| ||||||||||||    
T  26315211 agaggagtattagaacggttgcttatgattttga-gacatttgtaatgttttctattt 26315155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 107722 - 107762
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgatttt 157  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  107722 atccacaatagaggagtattagaacaattgcttacgatttt 107762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 26253527 - 26253464
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| ||||||||||||||| | ||||||| ||||| |||||| ||||||||| | ||||||||    
T  26253527 atccacaatagaggagtattaaagcaattgcttatga-tttcagaacatttgtaatattttctat 26253464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 29987979 - 29987928
Alignment:
Q  129 ggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||| ||||||||||| |||| |||| |||||| ||||||||||    
T  29987979 ggagtattagaacgattgcatatga-tttcgggacttttgtaatgttttctat 29987928  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 18535796 - 18535742
Alignment:
Q  126 agaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||    
T  18535796 agaggagtattagatcaattgcttatgattt-cgggacatttgtattgttttctat 18535742  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 3003088 - 3003019
Alignment:
Q  123 aatagaggag--tattagaacaattgcatatgattttcaggaca-tttgtattgttttctatttgagtca 189  Q
    ||||||||||  ||||||| ||||||| |||||||||||||| | |||||| ||||||||||||||||||    
T  3003088 aatagaggagcatattagagcaattgcttatgattttcaggatattttgtaatgttttctatttgagtca 3003019  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 22247029 - 22246969
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||||||||| ||||||  |||||||||  ||||||||||| ||||||||||    
T  22247029 caaaatagaggagtattagagcaattgactatgatttt-gggacatttgtaatgttttctat 22246969  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 26092935 - 26092888
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgta 170  Q
    ||||||||||||||||||||||||  |||| ||||| |||||||||||    
T  26092935 aatagaggagtattagaacaattgtctatggttttcgggacatttgta 26092888  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 7805777 - 7805705
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttc--tatttgagtc 188  Q
    ||||||||||||||||||||||| ||||| | ||||||||| |  ||||||||| |||||||  ||||||||||    
T  7805777 atccaaaatagaggagtattagagcaattacttatgattttga-tacatttgtaatgttttcaatatttgagtc 7805705  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 13906655 - 13906708
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||    
T  13906655 gaggagtattagatcaattgcttatga-tttcgggacatttgtaatgttttctat 13906708  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 18457183 - 18457236
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| ||||| |||| |||| |||||| ||||||||||    
T  18457183 gaggagtattagaacaattgcctatga-tttcgggacttttgtaatgttttctat 18457236  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 17135124 - 17135064
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||||||||| |  |||||  |||||||| | ||||||||||||||||||||||    
T  17135124 caaaatagaggagtattatattaattgtctatgatttcc-ggacatttgtattgttttctat 17135064  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 20431497 - 20431445
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttcta 180  Q
    ||||||||||||||| ||||| ||||| ||||||||| |||||| |||||||||    
T  20431497 gaggagtattagaacgattgcctatga-tttcaggacttttgtaatgttttcta 20431445  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 16242266 - 16242325
Alignment:
Q  128 aggagtattagaacaattgcatatgattttcaggacatttgtattgttttctatttgagtc 188  Q
    |||||||||||||| ||||| ||||||||| | ||| ||||||  ||||||||||||||||    
T  16242266 aggagtattagaacgattgcctatgattttga-gacttttgtaaagttttctatttgagtc 16242325  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 16157154 - 16157211
Alignment:
Q  125 tagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctattt 183  Q
    ||||||||||||||||||||||| |||||||||  |||||||| || ||||||||||||    
T  16157154 tagaggagtattagaacaattgcttatgatttt-gggacatttataatgttttctattt 16157211  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 8501572 - 8501635
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||| |||||||||||||||||| |||||||||  ||||||||| | ||||||||||    
T  8501572 atccagaatagatgagtattagaacaattgcttatgatttt-gggacatttgcaatgttttctat 8501635  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 17351003 - 17350950
Alignment:
Q  127 gaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||  ||||| ||||||||| |||||| ||||||||||    
T  17351003 gaggagtattagaacaattgtctatga-tttcaggacttttgtaatgttttctat 17350950  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 18545296 - 18545244
Alignment:
Q  128 aggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    |||||||||||| ||||||| ||||| |||| ||||||||| ||||||||||||    
T  18545296 aggagtattagatcaattgcctatga-tttcgggacatttgaattgttttctat 18545244  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 18970841 - 18970900
Alignment:
Q  123 aatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctattt 183  Q
    ||||||||||||||||| ||||||| || ||||||   |||||||||| ||||||||||||    
T  18970841 aatagaggagtattagagcaattgcttacgatttt-gcgacatttgtaatgttttctattt 18970900  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 32141453 - 32141516
Alignment:
Q  117 atccaaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||||||||||| ||  ||||| ||||| ||||  |||||||||| ||||||||||    
T  32141453 atccaaaatagaggagtattataaacattgcttatga-tttcgagacatttgtaatgttttctat 32141516  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 41371 - 41311
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||||||||||| ||||||| ||||| |||||| ||||||||| ||||||||||    
T  41371 caaaacagaggagtattagatcaattgcctatga-tttcagaacatttgtaatgttttctat 41311  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 88502 - 88561
Alignment:
Q  121 aaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||||||||||| ||||| ||||||  |||||||||  ||||||||||||||||||||||    
T  88502 aaaatagaggagtcttagagcaattgtctatgattttg-ggacatttgtattgttttctat 88561  T

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Target: scaffold0451 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 10158 - 10218
Alignment:
Q  120 caaaatagaggagtattagaacaattgcatatgattttcaggacatttgtattgttttctat 181  Q
    ||||| |||||||||||||| ||||||  ||||| |||||  ||||||||||||||||||||    
T  10158 caaaacagaggagtattagatcaattgtctatga-tttcataacatttgtattgttttctat 10218  T

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Target: scaffold0330 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 861 - 813
Alignment:
Q  8 cgaagggacacacgctgcacatgagtgctagaaacatagattttgttct 56  Q
    ||||||||||||| || ||| |||||||||||| | |||||||||||||    
T  861 cgaagggacacacactacacgtgagtgctagaagcgtagattttgttct 813  T

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